Pseudomonas chlororaphis O6, PchlO6_3859 (metH)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCATCAGCGCCGCCTGGCTGCCCTGGGCATCGAGCACCGAGTAGAAGCCCATACCCTGCCAGGCGTGCTTGCCGGAAGCGTCATAGAACAAGCGGGTCG GCGTCTGTGCCTTGCTGCGTTCGCCGTCGTAGACCGGGATCTTCGAGGCGCCGCGGGCCGCGCCCTCGCCGCTGCCCAGGTTGAGCTGGCAGGCCGAGTC GTAGCAGGCATGGCAGGCCACGCATTTCTCGGTGAAGATCGGCTGGATATCGCGGGTGTAGGAGATCGCTGGCGCGGGACCCTGGGCGCTGGCGAACGAA CTTAAAAGCAGCAGCACACTGCCGATGACAACGCGGTAAGACATATCCCTGGTCCAATCCATAAGAAAATCCGGCGATTCTACCGGGCCAGCACCGCCAC CAACATGAGCGATATTCATGCAAAACCGCCGCATGCTCTAAAAGCGCACAGGTTTGCTATGATCCTCGCCCTTCGTAATGGCCCTTCCAGGTAGTCTTTC
|
|
| DNA Sequence for Gene |
>PchlO6_3859
|metH
ATGTCCGATCGCAGCACGCGCCTCCAAGCCCTTCAGCAAGCCCTCAAAGAGCGCATCCTGATTCTCGACGGCGGCATGGGCACCATGATCCAGAGCTACA AGCTCGAGGAGCAGGACTACCGTGGCAAACGCTTCGCCGACTGGCCGAGCGACGTCAAGGGCAACAACGACCTGCTGGTGCTGACCCGTCCGGACGTGAT CGGCGGCATCGAGAAGGCCTACCTGGATGCCGGTGCCGACATCCTCGAAACCAACACCTTCAACGCCACGCAGATTTCCATGGCCGACTACGGCATGGAA GCGCTGGTCTACGAGCTCAACGTCGAAGGCGCGCGCCTGGCACGCAAGGTCGCCGATGCCAAGACCCTGGAAACCCCGGACAAGCCGCGCTTCGTCGCCG GCGTCCTGGGCCCGACCAGCCGCACCTGCTCGCTGTCGCCGGACGTCAACAACCCCGGCTACCGCAACGTCACCTTCGACGAACTGGTGGAGAACTACAC CGAGGCCACCAAGGGCCTGATCGAGGGCGGCGCCGACCTGATCCTGATCGAGACCATCTTCGACACCCTCAACGCCAAGGCGGCGATCTTCGCCGTGCAG GGTGTGTTCGAAGAGCTGGGCCTGGAACTGCCGATCATGATCTCCGGCACCATCACCGACGCCTCGGGCCGCACCCTGTCCGGGCAGACCACCGAAGCCT TCTGGAACTCGGTGGCCCACGCCAAGCCGATCTCCGTCGGCCTGAACTGCGCCCTCGGCGCCAGCGAACTGCGCCCCTACCTGGAAGAGCTGTCGAACAA GGCCAGCACCCACGTCTCCGCGCACCCCAACGCCGGCCTGCCCAACGAATTCGGCGAATACGACGAACTGCCGGCGCAAACCGCCAAGGTCATCGAAGAG TTCGCCCAGAGCGGCTTCCTGAACATCGTCGGCGGCTGCTGCGGCACCACCCCGGGGCATATCGAGGCCATCGCCAAGGCCGTCGCCGGCTATGCGCCGC GGCAGATCCCGGACATCCCCAAGGCCTGCCGCCTGTCGGGCCTGGAGCCGTTCACCATCGACCGCCAGTCGTTGTTCGTCAACGTCGGCGAGCGCACCAA CATTACCGGTTCCGCCAAGTTCGCCCGCCTGATCCGTGAAGAGAACTACACCGAAGCCCTGGAAGTCGCCCTGCAGCAGGTCGAAGCCGGCGCCCAGGTG ATCGACATCAACATGGACGAAGGCATGCTGGACTCGAAGAAGGCCATGGTGACCTTCCTCAACCTGATCGCCGGCGAGCCGGACATCTCGCGCGTGCCGA TCATGATCGACTCCTCCAAGTGGGAAGTGATCGAAGCCGGCCTCAAGTGCATCCAGGGCAAGGGCATCGTCAACTCCATCAGCATGAAGGAAGGCGTCGA GCAGTTCATTCATCACGCCAAGCTGTGCAAGCGCTACGGCGCCGCCGTGGTGGTGATGGCCTTCGACGAAGCCGGCCAGGCCGACACCGAGGCGCGCAAG AAGGAAATCTGCAAACGCTCCTACGACATCCTGGTCAACGACGTCGGCTTCCCGCCGGAAGACATCATCTTCGACCCGAACATCTTCGCCGTGGCCACCG GCATCGAGGAACACAACAACTACGCGGTGGACTTCATTCACGCCTGCGCCTACATCCGCGACGAGCTGCCCTATGCGCTGAGTTCCGGTGGGGTGTCCAA CGTGTCGTTCTCGTTCCGTGGCAACAACCCGGTGCGCGAGGCGATCCACTCGGTGTTCCTGCTGTATGCGATCCGCAACGGCCTGACCATGGGTATCGTC AACGCCGGCCAGCTGGAGATCTACGACCAGATCCCGCAGGAGCTGCGCGACGCCGTGGAGGACGTGATCCTCAACCGCACCCCGGAAGGCACCGATGCCC TCCTCGCCATCGCCGACAAGTACAAGGGCGATGGCAGCGTCAAGGAAGCCGAGACCGAAGAGTGGCGCAACTGGGACGTCAACAAGCGCCTGGAACACGC CCTGGTCAAGGGCATCACCACGCACATTGTCGAAGATACCGAAGAGTCGCGGCTGTCCTTCGCCCGCCCGATCGAAGTCATCGAAGGCCCGCTGATGGCC GGCATGAACATCGTCGGCGACCTGTTCGGCGCCGGCAAAATGTTCCTGCCCCAGGTGGTGAAGTCCGCCCGGGTGATGAAGCAGGCGGTGGCTCACCTGA TTCCCTTTATCGAGCTGGAAAAAGGCGACAAGCCGCAAGCCAAGGGCAAGATCCTCATGGCCACGGTCAAGGGCGACGTGCACGACATCGGCAAGAACAT CGTCGGCGTGGTCCTGGGCTGTAACGGCTACGACATCGTCGACCTCGGCGTGATGGTGCCGGCAGAGAAGATCCTGCAGGTGGCCAAGGAACAGAAGTGC GACATCATTGGCCTGTCCGGCCTGATCACCCCGTCGCTCGACGAGATGGTCCACGTCGCCCGGGAAATGCAGCGCCAGGACTTCCACCTGCCGCTGATGA TCGGTGGCGCCACCACCTCCAAGGCGCACACGGCGGTGAAGATCGAGCCCAAGTACAGCAATGACGCGGTGGTCTACGTCACCGACGCCTCGCGCGCCGT GGGCGTGGCCACCCAGCTGCTGTCCAAGGAGCTCAAGGCCGGTTTCGTCGAGCGCACCCGCGAAGAGTACGTGGAAGTCCGCGAGCGCACCGCCAATCGC AGCGCCCGCACCGAGCGCCTGAGCTACCCGGCGGCCGTGGCCAAGAAGCCGCAGTTCGACTGGAGCAGCTACCAGCCGACCGTGCCGACCTTCACCGGGG CCAAGGTGCTGGACAATATCGACCTGCGGGTCCTGGCCGAATACATCGACTGGACGCCGTTCTTCATCTCCTGGGATCTGGCCGGCAAGTTCCCGCGCAT CCTTCAGGACGAGGTGGTGGGTGAAGCCGCCACCGCGCTGTACAAGGACGCCCGGGAAATGCTCGACAAGCTGATCGACGAGAAGCTGATCAGCGCCCGC GCGGTGTTCGGCTTCTGGCCGGCCAACCAGGTGCAGGACGACGACCTGGAAGTCTATGGCGACGACGGCCAGCCCTTGGCCAGGCTGCACCACCTGCGCC AGCAGACCATCAAGACCGACGGCAAGCCGAACTTCTCCCTGGCCGACTTCGTCGCGCCCAAGGACAGCGGCGTGACCGACTACGTCGGTGGCTTCATCAC CACCGCCGGCATCGGCGCCGAAGAAGTGGCCAAGGCCTATCAGGACAAGGGCGACGACTACAACTCGATCATGGTCAAGGCCCTGGCCGACCGCCTGGCC GAGGCTTGCGCCGAGTGGCTGCACCAGCAGGTGCGCAAAGACTACTGGGGCTACGCCAAGGACGAACAGCTGGACAACGAGGCGCTGATCAAGGAGCAGT ACAGCGGTATCCGCCCTGCCCCGGGTTATCCGGCCTGCCCGGACCATACCGAGAAGAGCACCCTGTTCGCCCTGCTCGACCCCGAGGCATCCGAAGGCAA GGCCGGGCGCAGCGGCGTTTTCCTCACCGAACACTTCGCCATGTTCCCGGCGGCGGCGGTCAGCGGCTGGTACTTCGCCCATCCGCAGGCGCAGTACTTC GCCGTGGGCAAGATCGACAAGGACCAGGTCAACAGCTACAGCGCGCGCAAAGGCCAGGACCTGGCCGTGACCGAGCGCTGGCTGGCGCCGAACCTGGGCT ACGACAACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGCTACGCGCCCCCACTGTAGGAGCGAGCTTGCTCGCGATGAACGCCAACGATAACGCGGTGAATCTGAAGAATCGCGTTGTCTTGACGTTTTGATCGC GAGCAAGCTCGCTCCTACAGGGTGTATGGGCAGGAGCTACGCGAAAATTGTCTATGCTTTCCCTACACTCACTTGTGTCGAGGGATTTATGGACGACCCC ATCAACAACAAGCCGCCGACCCTTTGGCAGATGCTGCAAAGCGTCGCCGCTGCCGCCTTTGGCGTACAGAGCGGCAAGAACCGCAAGCGCGACTTTACCC ACGGCAAGCCCAGCCATTTCGTGATCCTGGGCATTCTGTTCACTGCGGTGTTTGCCTTGACCCTGTTCGGTATCGTCAAGCTGGTCGTGCACCTGGCGGG GCTTTGAACGCCTGTCAGTGCAACAACAGATTCAGCGAGAAGGGATAACGGTAGCCGGCCGGCTTGCCCTCGGCCGACAACCCGCGAAAGTCCACACCGT
|
|
| Amino Acid Sequence |
>B12-dependent methionine synthase
MSDRSTRLQALQQALKERILILDGGMGTMIQSYKLEEQDYRGKRFADWPSDVKGNNDLLVLTRPDVIGGIEKAYLDAGADILETNTFNATQISMADYGME ALVYELNVEGARLARKVADAKTLETPDKPRFVAGVLGPTSRTCSLSPDVNNPGYRNVTFDELVENYTEATKGLIEGGADLILIETIFDTLNAKAAIFAVQ GVFEELGLELPIMISGTITDASGRTLSGQTTEAFWNSVAHAKPISVGLNCALGASELRPYLEELSNKASTHVSAHPNAGLPNEFGEYDELPAQTAKVIEE FAQSGFLNIVGGCCGTTPGHIEAIAKAVAGYAPRQIPDIPKACRLSGLEPFTIDRQSLFVNVGERTNITGSAKFARLIREENYTEALEVALQQVEAGAQV IDINMDEGMLDSKKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFIHHAKLCKRYGAAVVVMAFDEAGQADTEARK KEICKRSYDILVNDVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIHACAYIRDELPYALSSGGVSNVSFSFRGNNPVREAIHSVFLLYAIRNGLTMGIV NAGQLEIYDQIPQELRDAVEDVILNRTPEGTDALLAIADKYKGDGSVKEAETEEWRNWDVNKRLEHALVKGITTHIVEDTEESRLSFARPIEVIEGPLMA GMNIVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIELEKGDKPQAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQVAKEQKC DIIGLSGLITPSLDEMVHVAREMQRQDFHLPLMIGGATTSKAHTAVKIEPKYSNDAVVYVTDASRAVGVATQLLSKELKAGFVERTREEYVEVRERTANR SARTERLSYPAAVAKKPQFDWSSYQPTVPTFTGAKVLDNIDLRVLAEYIDWTPFFISWDLAGKFPRILQDEVVGEAATALYKDAREMLDKLIDEKLISAR AVFGFWPANQVQDDDLEVYGDDGQPLARLHHLRQQTIKTDGKPNFSLADFVAPKDSGVTDYVGGFITTAGIGAEEVAKAYQDKGDDYNSIMVKALADRLA EACAEWLHQQVRKDYWGYAKDEQLDNEALIKEQYSGIRPAPGYPACPDHTEKSTLFALLDPEASEGKAGRSGVFLTEHFAMFPAAAVSGWYFAHPQAQYF AVGKIDKDQVNSYSARKGQDLAVTERWLAPNLGYDN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|