Pseudomonas chlororaphis O6, PchlO6_3754 (tssG1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCGGTGGGGACCGGCAAAAGCGATTTCACCCTGGAAGACAGCGCCCCGGTGCTGGCCGTGCGCTGCCTGGCCGGGCCAAGCCGGCCGCGACCCAGCC GCGCGCACGATGCCAGCGCCTGGCGGCTGATCAGCCAGCTATCGCTGAACTACCTGTCGCTGAGCGAACAGGGCCAGGGTGCCGCGGCGCTGCGCGAATT GCTGCGCCTGTACGGCGACCCCGGTGATTCGGCGCTGCAGTTGCAAATCGAAGGCCTGCGCCAGGTGCGCAGCACGCCCTGCACCCGCCGGTTGCCGATG CCGGGGCCGATCGTGTTTGGCCGTGGCCTGGAGATCAGCCTGGAGTTCGACGAAAACGCCTTCCGCGGCACCGGCGTGTACCTGCTGGGCGCGGTGTTCG AGCGCTTCCTGGCCCGTTACGTGTCGATCAACAGCTTCACCGAAACCGTGCTGCGCACCACCGAGCGCGGCGAAATCATGCGATGGCAGGCGCACCCCGG
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| DNA Sequence for Gene |
>PchlO6_3754
|tssG1
ATGTCGACCGAACCTCTGAAACCGCTGCACAGCATCGATCGGATGGCCGACGAGCCCTGGGCCTACGACTTCTTCCAGGCGCTGCGGCGCATCGAGTGCG AGGCCAGCGACCGGCCGCGCATCGGCCATTCCCTGCGCTTGCACGACGACCCGCTGCGCCTGGGGCAGAGACCCGACTGCGGCTTTGCCCCCTCGACCCT GGCCAGTATCGAGGCCGACCCCGAGGGCGCCGCGCCGCGCATCGAGCAGTTCTTTTTCGGCCTGACCGGGCCCAACGGCCCGCTGCCGCTGCACCTGACC GAATACGCCCGCGATCGCCAGCGCAACAGCGGCGACGCCAGCTTCACGCGCTTTCTCGACGTGTTCAATCACCGCTTGTTGTGCCTGTTCTACCGCGCCT GGGCCGAGGCGCGGCCGACCGTCAGCCACGACCGCCCCGACCACGACTACTGGTCGATGCGCCTGGCCGCACTGTCCGGACGGGGCATGACCAGCCTGCT CGGCCAGGGCCCGATCGCCGACTCGGCGCGCTACCACTTCACCGGTCACCTGGCGGCACAGACCCGCTACCCGGACGGCTTGCGCGCGATCCTGGAAGAC TATTTCGGCGTGCCGGTGAGCATCGAGGAATACGTCGGCCAGTGGCTGGAGTTGCCGCAGCGCAGCCAGCTGGGCGTGGCGCTGTGCTCGCTCGGCAGCG ACCTGAGCCTGGGCACCCACGTCTGGGATCGCCAGCATAAATTCCGCATCCGCCTGGGGCCTTTGAGCCTTGCGCAATACCAACGCCTGCTGCCCGGCCA GGACAGCTTCGGCGAACTGGCCGCCTGGGTCGCCGAGTACCAGGGCGAGGAGCTGGATTGGGAAGTCAATCTGCTGCTACAGCGCGCGCAAGTGCCGCGC ATCGATCTCGACGGCCAGACCCGCCTGGGCTTCGACACCTGGCTCGGCAGCCCGCCGACGGATGCCGACGACCTGCTGCTGGTCCGCGAATACGCCAGCC ATACCACCCCCTCAAGGAGCCGCGATCATGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCAGCCGCGTCGCGCTGTTCGGCAAGTTGAACAGCCCGGCCTACAAGGCCATCGAAGCCGCCACCGTGTTCTGCAAACTGCGCGGCAACCCCTATGTG GAACTGGTGCATTGGCTGCATCAGCTCCTGCAATTGCAGGACAGCGACCTGCACCGCCTGGTCCGTCAGTTCAGCCTCGACCCGGCGCGCCTGTCCAGGG ATATCACCGACGCCCTGGACCGCCTGCCGCGCGGCTCGACCTCGATTACCGACCTGTCCGTGCAGGTCGAGGAAGCCGTGGAGCGCGGCTGGGTCTATGG CAGTCTGCTGTTCGGCGAGAGCCAGGTACGCAGCGCCCACCTGATCGTCGGCATGCTCAAGACACCGAGCCTGCGCCACGCACTCGCGGCCCTCTCCCGC GAGTTCGACAAGATCAAGGTGGAGCACCTGATCGAGCGTTTCGACGAATACCTCGGCGACTCGCCGGAAAACGGCCTGGCCGCCAGCGACGGTTTCAACG
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| Amino Acid Sequence |
>type VI secretion protein
MSTEPLKPLHSIDRMADEPWAYDFFQALRRIECEASDRPRIGHSLRLHDDPLRLGQRPDCGFAPSTLASIEADPEGAAPRIEQFFFGLTGPNGPLPLHLT EYARDRQRNSGDASFTRFLDVFNHRLLCLFYRAWAEARPTVSHDRPDHDYWSMRLAALSGRGMTSLLGQGPIADSARYHFTGHLAAQTRYPDGLRAILED YFGVPVSIEEYVGQWLELPQRSQLGVALCSLGSDLSLGTHVWDRQHKFRIRLGPLSLAQYQRLLPGQDSFGELAAWVAEYQGEELDWEVNLLLQRAQVPR IDLDGQTRLGFDTWLGSPPTDADDLLLVREYASHTTPSRSRDHE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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