Pseudomonas chlororaphis O6, PchlO6_3424 (oprN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTACTGGCGGCGCAATACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATCGCCGGGGTGA TCCTGTCCGGTGGCGATAACAACATCTTCACCCAGATCGGCCTGATCGTACTGGTGGGCCTGGCGTGTAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGACAAACAGGAAGAAGGTCTCGACCCGCTGGCCGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGGCCGATCCTGATGACCTCGTTCGCCTTCATCATG GGTGTGGTGCCCCTGGTGTTCTCCAGCGGCGCCGGTGCGGAAATGCGTCATGCCATGGGTGTCGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCG GCCTGCTGCTGACCCCGGTGTTCTACGTCCTGATCCGCAACTATGTGGAGCGCAGCGAAGCCCGCAAAGCGACCCGTGCCCTGAAACTGGAGGCGCAACA
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| DNA Sequence for Gene |
>PchlO6_3424
|oprN
ATGAGCCTGAAAGTCTTCCTGCCGAGCTTGCTGGTACTGGCCCTGAGTGCCTGTGCCGTCGGCCCGGACTATCAGACCCCGACGACCGAGGCGGCCAACA TCACGGCCGCCACCGATGGCGCCGCGGGCCAGAAGAATTTCGACCGCGCGCGTTTCGAAGGCATCTGGTGGCAACAGTTCGACGACCCGGTGCTCAACCA ACTGGTGACCCGGTCCCTGCAGGGCAACCGTGAGTTGCGCGTGGCCTTCGCCCGCCTGCGGGCCGCCCGGGCGATTCGCGACGACGCCAGCAACGATGCG ATGCCGACCATCACCAGCCGCGCCAGCAGCGACCTGGCCAAGGGTCAGATCCCCGGCCAGACCACTCGCCGGGTCAACAGCGAACGCTACGATCTGGGCC TGGACATGGCCTGGGAACTGGACCTGTTCGGCCGCATCCAGCGCAACCTGGAAGCCAGCGAAGCCGACCAGCAGGCCGCCGAGGCCGACCTCTACCAGCT GCAAGTCACCATGATTGCCGAGCTGGTGGATGCCTACGGCCAGCTGCGCGGCGCCCAGCTGCGGGAAAAGATCGCCCTGGCCAACCTGAGCAACCAGCAG GAGTCGCGCAAGATCACCGAAAGCCTGCGTGACGCCGGCGTCGGCGACCAGCTCGACGTGGTCCGCGCCGATGCGCGCCTGGCCGCGGTAGAGGCCAGCG TGCCGCAACTGCAGGCCGAACAGGTGCGCCAGCGCAACCGTATCGCCACCCTGCTGGGCGAGCGTCCGGACAAGCTCAGCGTCGATCTTGCGCCCGCGCA GCTGCCGGCGATTGCCAAGGCCCTGCCGATCGGCGACCCGGGCGAGCTGCTGCAACGCCGTCCGGACATCCTCAGCGCCGAACGCCAGTTGGCCGCCGCC ACCGCGCGGATCGGCGTGGCCAAGGCCGACCTGTTCCCCCGGGTCAGCCTCAGCGGTTTCCTCGGCTTCACCGCCGGCCGTGGTTCGCAGATCGGCTCCT CGGCCGCCAATGCCTGGGCCCTGGGCCCGAGCATTACCTGGGCTGCTTTCGACCTGGGTAGCGTGCGCGCCCGTCTGCGCGGCGCCAATGCCGACGCCGA CGGCGCCCTGGCGACCTACGAGCAGCAAGTGCTGCTGGCCCTGGAAGAGTCGGAAAACGCTTTCAGCGATTACGGCAAGCGCCAGCAACGGCTGATCTCG CTGATTCGCCAGAGCGAGTCGAGCCGCGCCGCGGCGGACCTGGCACAAATCCGCTACCGCGAAGGCACCGTCGATTTCCTGGTGCTGCTCGACGCCCAGC GCGAACGCCTGGCCGCCGAAGACTCCCAGGCCCAGGCCGAGGTCGACCTGTACCGTGGCATCGTCGCCATCTACAAGGCCCTGGGTGGCGGCTGGCAGCC TGAGACGGTCGCCAGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTCAACCGAGCTCCTTTGGTTGGCCGCAACCAACCAAATTTTTGCCCCGTGTTCTCATTCGGTCACGGGGCTTTTTTTGCCTCAAAAAAAGCATCGC GGGCAAGCCTCGCTCCTACGGGACCGCATGAATCTGTAGGAGCGAGCGGGCGGCGATCCGACTTGCCCGCGATAACAATCGTTCAGACAACCCAACCCTG TGCCTATTCCAGCACCGTCACCGTCGCCGTGGTACCGGCGCGCAACCTGTCCTTGCCCGGGTAATCGGGGTCGATGGCGATCCGCACCGGTACCCGCTGC GCCAGCTTGACCCAGGTGTAGCTGGGGTTGATGTTGGCCAGCAGGCGGCTGCCCTGGGAGTTCTCGCGGTCGGTAATGGCGAAGGCGATGCTCTGTACCT GGCCGCCGAAGGTCTCGCCGCTCATCAACTGGATGCGCACCGCACTGCCCTCCTCGATCCGTGGCAGCTTGGTCTCCTCGAAGTAACCGCTGATATAGAA
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| Amino Acid Sequence |
>RND transporter
MSLKVFLPSLLVLALSACAVGPDYQTPTTEAANITAATDGAAGQKNFDRARFEGIWWQQFDDPVLNQLVTRSLQGNRELRVAFARLRAARAIRDDASNDA MPTITSRASSDLAKGQIPGQTTRRVNSERYDLGLDMAWELDLFGRIQRNLEASEADQQAAEADLYQLQVTMIAELVDAYGQLRGAQLREKIALANLSNQQ ESRKITESLRDAGVGDQLDVVRADARLAAVEASVPQLQAEQVRQRNRIATLLGERPDKLSVDLAPAQLPAIAKALPIGDPGELLQRRPDILSAERQLAAA TARIGVAKADLFPRVSLSGFLGFTAGRGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGANADADGALATYEQQVLLALEESENAFSDYGKRQQRLIS LIRQSESSRAAADLAQIRYREGTVDFLVLLDAQRERLAAEDSQAQAEVDLYRGIVAIYKALGGGWQPETVASK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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