Pseudomonas chlororaphis O6, PchlO6_3296 (cbrD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTCAGCCCGCTGACCACCACCTTGTCGGCCTATGTCTGGCTGACCGGCAGCGTCTACGGCGCCAGCTGGCCGGAGCCGCGTGCCCTGGGCGGCTGGCTG CTGGCGATCCTGCCGTTGCTGGTGTGGCTGGCGCGCCAGGTGCGGGTGCAACAACTGGACGACGCCTTGGCCCAGGGCATCGGTGTGCGGGTACAGTGGC TGCGCGCCGGCCTGCTCTTGGTGAGCGTGGCCCTGGCCGGGGCGGCGGTGGCCTGGGGCGGGGCGATTGCCTTTGTCGGGCTGATCGCGCCGCATATCGC CAAGCGCCTGGTGGCCCCGGGGTTTGCCGGGCAGGCGGTGATGGCGGCGCTGGTCGGCGCCAACTTGGTGATACTGGCCGACCTGATCGGGCGCACCCTG TTCCTGCCCCTGGATCTGCCGGCGGGGATCTTCGTCGCGGTGCTGGGCACGCCGTTCTTTCTTTATCTTTTGATCAACCAGCGGCACTAAGGAATTCCCG
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| DNA Sequence for Gene |
>PchlO6_3296
|cbrD
ATGTCCTCGATGGCAACCCAGCAACTGACCCTGGGCTATCAGCGCCAGGTGATTATCGACGGGCTTGACCTGCAACTGCCGGCGGGCCAGGTGTCGGTGC TGATCGGCAGCAACGGCTGCGGCAAGAGCACCCTGCTCAAATCCCTGGCGCGGCTGCTCAAGCCGCAGCAGGGCTCGGTGATCCTCAATGGCGAGGATAT CCAGCGCAAATCCACCGCGGCGGTGGCGCGGGAACTGGCGATCCTGCCGCAGATGCCCAGCGCCCCCGAAGGCATCACCGTGCGCCAGCTGGTGGCCCTG GGGCGTTATCCCTACCAGAACTGGATGCAGCAATGGTCGGCCCAGGATGAAGCCATGGTCGAGCGCGCCCTGTTGCAGACCGGCGTGCAGGCCCTGGCGG AGCGGCCGGTGGACGCCTTGTCCGGCGGCCAGCGCCAGCGGGTGTGGATCGCCATGACCCTGGCCCAGGACACCGAGATCGTGCTGCTCGACGAGCCCAC CACCTTTCTCGACCTGGCGCACCAGATCGAGGTGCTGGATCTGTTGCGCGAGCTCAATCGCCAGGAGAACAAGACCATCGTCATGGTCCTGCACGACCTC AACCTGGCCTGCCGCTACGCCGACCATATGGTGGCGGTGCACCAGCGCACCGCGTTCGCCCAGGGCCGGCCGGCAGAGATTCTGACCGAGGAACTGGTCA AGCAGGTGTTCGACCTCAATTGCCGGATCATCCCCGATCCGTTTTTCGGCACGCCGCTGTGCATTCCCTTTGGCCGGGAACTGCCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGCAAACCGCCTTCAACGCGCAAGACTGGAGCGTGCTATCCGGGCCGCTGCGCCTGAAACCCATGGCTCAATGTGACCGGCAGCGCTCCCTGAGCGC CCGGGCCTTGCTTGACGATGAAACCTGTATCGCGCTGTTCGACCAGCTGGGGCCGGTGATCGGTTCGCCGACCCGGGCGATCACCGCCTCGCTGCTGGCC AAGCGTTTTTCCTTTCTCGCCACCGGCGCCTGCCTGTACGCCATGTCGGTGTGCGACCAGGGCCTGCTGCTGTCCCTGGACGATTGCGTGATCGAGTACG GCCACGACGACGGGCTCTGGACTTCCTCGATGCCGCTGCCGGACCGGGCTCCCCAGGTTTATGCCGCGGGCGAACGCGATGCCTGGCGCGCGTCCATTGT CGAGTCGTTGTTCGCCGGAGTGCTGGCGCCGCTGTGGCAGACCTTCAACCGGGTCAGCGGCATTTCCCGGCGCATCCTCTGGGAAAACACCGCGGTGCGG
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| Amino Acid Sequence |
>iron-enterobactin transporter ATP-binding protein
MSSMATQQLTLGYQRQVIIDGLDLQLPAGQVSVLIGSNGCGKSTLLKSLARLLKPQQGSVILNGEDIQRKSTAAVARELAILPQMPSAPEGITVRQLVAL GRYPYQNWMQQWSAQDEAMVERALLQTGVQALAERPVDALSGGQRQRVWIAMTLAQDTEIVLLDEPTTFLDLAHQIEVLDLLRELNRQENKTIVMVLHDL NLACRYADHMVAVHQRTAFAQGRPAEILTEELVKQVFDLNCRIIPDPFFGTPLCIPFGRELPQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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