Pseudomonas chlororaphis O6, PchlO6_3111 (fadB2x)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCGCCGATGTGCTGGTTCAACGGCTACGACGGCGTGGTGACCAAGGCCTTCGTCGGCCACTACTACCTCAGCGGCGACACCGTGGAGCTGAACCCGGA CGGCAGCATCAGCTTCGTCGGCCGCAGTGACGATGTGATCACCACCTCGGGTTACCGGGTCGGCCCGTTCGACGTGGAAAGCGCGCTGATCGAGCACCCG GCGGTGGTCGAGGCGGCGGTGATCGGCAAGCCCGATCCGGAGCGCACCGAGCTGGTCAAGGCCTTCGTCGTGCTCAGCCCGCAATACCGCGCCGCGCCGG AGCTGGCCGAAGAGCTGCGCCAGCATGTGCGCAAGCGCCTGGCCGCGCACTCGTACCCCCGTGAAATCGAATTTGTCAGCGAATTGCCGAAAACCCCAAG CGGCAAGTTGCAGCGCTTCATCCTGCGCAACCAGGAAATCGCCAAGGCTCAAGAGGCCGCGGCGCACAAGGCTTCGGCCTGAATTACCCAGGAACTCATG
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| DNA Sequence for Gene |
>PchlO6_3111
|fadB2x
ATGCACATCGAAAACAAGGTTTTTCTCGTCAGCGGCGGCGCTTCCGGTCTCGGTGCGGCCACCGCGCAGATGCTGGTCAAGGCCGGCGCCCAGGTGATGC TGGTGGACCTCAATGCCGAGGCCGTCGCGGCCCAGGCGCAGCAGCTCGGCTGCCGGAGCACGGTCGCCGATATCACTGACGAAGCGGCCGCCGAAGCGGC GGTGCAGGCCACGCTCAAGGCGTTCGGCAGCCTGCATGGGCTGGTCAACTGCGCCGGGATCGTGCGCGGCGAGAAGATCCTCGGCAAGCACGGCCCCCAT GCCCTGGCCAGCTTCAGCCAGGTGATCAACGTCAACCTGATCGGCAGTTTCAACCTGATGCGACTGGCCGCCGCGGCCATCGCCAATAGCGAACCGAACG CCGACGGCGAGCGCGGGGTAATCATCAACACCGCTTCGGCGGCAGCCTTCGACGGGCAGATCGGCCAGGCCGCCTATGCCGCGTCCAAGGGCGCGATCGC CAGCCTGACCCTGCCGGCCGCCCGCGAACTGGCGCGCTTCGGCATCCGGGTGATGACCATCGCCCCGGGCATTTTCGAAACCCCGATGATGGCCGGCATG AGCGACGAAGTCCGCGCTTCCCTGGCCGCCGGCGTGCCGTTCCCGCCACGCCTGGGCAAGCCGGACGAGTACGCCGCGCTGGTCGGGCATATCATTAGCA ACAGCATGCTCAATGGCGAGGTGATCCGTCTCGACGGTGCCCTGCGCATGGCAGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAAGGAGGATGACCATGAACCAAGATCCGATCGTTATCGTCAGCGCCGTCCGCACCCCGATGGGCGGTTTCCAGGGCGAGCTGAAAAGCCTGACCGCGC CGCAACTCGGCGCCGCCGCGATCAAGGCCGCGGTGGAGCGCGCTGGAGTGGCCAGCGACAGCGTCGATGAAGTGCTGTTCGGCTGCGTGCTGCCGGCCGG TCTCGGCCAGGCGCCGGCCCGTCAGGCGGCGCTGGGCGCCGGGCTGGACAAGGCCACCCGCTGCACCACCCTGAACAAGATGTGCGGCTCCGGCATGGCC GCGACCATCGCCGCCCACGACATGCTGCTGGCCGGCAGCGCCGAGGTGGTGATCGCCGGCGGCATGGAAAGCATGTCCAACGCGCCGTACCTGCTGGATC GCGCCCGCAGCGGCTACCGCATGGGCCACGGGCGGGTGCTCGACCATATGTTCCTCGACGGCCTCGAAGACGCCTACGACAAGGGCCGCCTGATGGGCAC
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| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MHIENKVFLVSGGASGLGAATAQMLVKAGAQVMLVDLNAEAVAAQAQQLGCRSTVADITDEAAAEAAVQATLKAFGSLHGLVNCAGIVRGEKILGKHGPH ALASFSQVINVNLIGSFNLMRLAAAAIANSEPNADGERGVIINTASAAAFDGQIGQAAYAASKGAIASLTLPAARELARFGIRVMTIAPGIFETPMMAGM SDEVRASLAAGVPFPPRLGKPDEYAALVGHIISNSMLNGEVIRLDGALRMAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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