Pseudomonas chlororaphis O6, PchlO6_2698

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAGGCCGGCTCGTGGCTCCACTTGACCAGGGGCTTGGGCAGTTGCGCCGCATCGACGTTGGCCAGCATCGCTTCCACGCCGACCATCGAGCGCACCTGCT GCCCGGCGGTGATCACCAGCGGGCTATGGGAGTACCAGGCATTGGTCAGCGCGCCCATGCCGTTGCCGGTACCGGCGGCGGCATGCAGGTTGACGAAGGT CGGCTTGCCAGTGGCCAGGGCATAACCGTCGGCCATGCCGACCACCGCGCCTTCGTGCAGGCCGAGGATGTAGCGGAAGTCCTCGGGAAACCCCTTGAGA AACGGCAGCTCGTTGGAGCCAGGATTGCCGAAGATGGTGGTCAGGCCTTGCTCGCGAAGAATCTCGTAGGACGCAGAGTGAACGGTTTTCATAAGGACCC TTGTTATTGGATTTCGGGTTACTCTTGCAGCCGCTACAAAATTGATCAAATCGATACTATCTCTATCAAAAATAAGACCTGTCTATATCCCAGGGGCACC
DNA Sequence for Gene
>PchlO6_2698
ATGAGCCACATCGATCTGAACCTGATCCGCACCTTCGTCACCCTCTACGAAGCCCGCAGCGTGACCCTGGCCGCCGAGCGCCTGTTCGTCACCCAGCCCT CGGTCAGCTATGGCCTGGCGCGCCTGCGCGAGCTGTTCGACGACGCCCTGTTCAGCCGCACCCGCGACGGCATCCAGCCAACCTTTGTCGCCGAGCAGTT GTATGGCCCCTTGCGCGAATCCCTGACCCGCATCGAAAGCACCGTGCAGGGCTGTCGCCACTTCGACCCGGCGAGCACCGAGCGGCGCTTTCGCATCGCC CTCTCCGACCTCGGCGAAATCGGCTTTCTGCCGCTGATCCTCGCGCGCTTGAACCAGGACGCGCCGCTGGCCGAAGTCGAGGTCCTGCCGCTGCAGGTGG ACCAGGTCGGCGAGTGGCTGGCCAGCGGCAAGGTCGATGCCGCGATCTGCCGCCAGCCGGTCCCCGGCGTCCGCAGCCGAGTGCTGATGCACGAGCGTTA TGTGTGCCTGCTCAGCACCGGCCACCCGCGCATCGACCAGCAGTTGAGCCTGGAACAGTTCCTCGCCGAACGGCACGTCGCCGTGACCCGCACCACCGGC CACGGCAATGTCGAAGACGTGCTGAAAAACATGAACGTGGAACGGCGCATCAGCCTGCATGTGCCGCACTTCTCGGTGCTGCCGAAAATCATTCCCGGCA CCGACCTGCTGGCGGTGCTGCCGGCGCAGATCGCCCGGCTGTTCATCCATGAAGGCGAGCTGAAGCTGCTCGAACTGCCGTTCCCGGTGGCCGAGTTCGC CGTGTCCCTGAACTGGCATCCCAACAGCGACAGCTCCGCCGCCCTGCGCTGGTTCTGCGACACCATCGCCGACGCCATCATCAGCGGCCAGGGCCAGAGC CAGGGCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACGCCGGCCATCGCCGGCTGCGCCCGGGCCCGGGCCGGCTTGAGCAGCAACAGGCAGCCGGCGGCGATCACGAACACGCTGGCAAACACCCCGTACAGAT GCAGCGGCTGCCAGCCGCCATCCAGCAGGAAGCCGGCCACGGTCGGCGAAAGGATCGCGCCGATGCGACCGATACCGATGCCCCAACCAACGCCCGTGGC GCGCACCGAGGCGTCATAGACCACTGGCGACAGCGCATAGAGACCGGCCACGCAGCCATTGGAAAACAGCCCGATCAGCAACCCCAGGCCGAGCGCCGCG GCAATCGACGAGGCCGAGCCGACAAACAGCACCAGCAGGCCGGCGGTGATCAGCATGAACAGCGCCAGCACCCGGCCCAGCGGCCAGCGCGAGGCCAGGC CGCCGATCAGCGCCGCGCCGAAGATCCCGCCGACGCTGAGCAGCACCCCGCCGGTGATCCCCTGCTGCGCCGACAGCCCAGCGGCCACCAGCAGTTTCGG
Amino Acid Sequence
>LysR family transcriptional regulator
MSHIDLNLIRTFVTLYEARSVTLAAERLFVTQPSVSYGLARLRELFDDALFSRTRDGIQPTFVAEQLYGPLRESLTRIESTVQGCRHFDPASTERRFRIA LSDLGEIGFLPLILARLNQDAPLAEVEVLPLQVDQVGEWLASGKVDAAICRQPVPGVRSRVLMHERYVCLLSTGHPRIDQQLSLEQFLAERHVAVTRTTG HGNVEDVLKNMNVERRISLHVPHFSVLPKIIPGTDLLAVLPAQIARLFIHEGELKLLELPFPVAEFAVSLNWHPNSDSSAALRWFCDTIADAIISGQGQS QG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site