Pseudomonas chlororaphis O6, PchlO6_2619
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGAATCGCCATTGAGAGCCTGGACACCCCGGCCGACCCTGCCGACGCGGCTTCCGTAGAGGAAGAGCGGACCTGGCTGGTCAACGCTATCGACCGCGAC CAGCGCATGCTGCCGCAACTGGAGCAGGCCCTGGGCCGTATCGGCGACGACAGCTTCGGCTGGTGCGACGACAGCGGCGAGCCGATCGGCCTGAAACGCC TGCTGATCAGCCCGACCACCAAGTACTGCATCGAAGCTCAGGAACGTCACGAGCAGATCGACAAGCACCAGCGTCAGGCCTGATCGCCAAGACTTCTCCC CTCGCGGGCAAGCCCCATCCCAAGGTCGCCACTGCACCTGGGCTGGCAGGCTTGCCCGCGAGTCGTTTGTGGGCGCCCTGAAAGCCCCTCGCGCATTTCT ATTGATCTGCTGCAAACCTGCGACTAATGGACCATGGATAATGGCTTTTTAGTGGCGTTCAATGCAGAGCAAATAATTAGAAAAACGTGGGGTAATCCAG
|
|
| DNA Sequence for Gene |
>PchlO6_2619
ATGACGCAAGACGGATCTTTGTCGGCTGCCACTGCGCAACCGCTGCCAACAGCCCAAGCCACCCGGCGCTGGCAGGTTCCAGCCCTGCAAAGCAGCGCCT TGCTGCTGGTGTTGTATGCCCTGTCCCATGGGCTGCTTTCCTTCTACCTTGCCGTGCCGCTGATGCTGCTGATCGTCTGGCTGCCGCGCCTGGCCAGGCC CAAGGCCGCAGCGCCGGCGAGCAGCGTCGACAACAACGAAATCGCCGCGCTGACTCGCGACCTGTCCTACAGCACCAGCCATAACGCACTGTCGGCCGCC GGCGTGGCCTATTCGGTCCGGCAACTGGCCGGGCGGGTGCAGTCGCAACTGGACTCGGCGGCGCGCATCGTCAGCAGCGCCGAGGCGATGATCCACACCG AGCAACTGGCTGCGCAGCTCAGCCAGCAGGCCCTGAGCGCCGCCAGCGAAGCCCACCGCAGCAGCGCCGAAGGCAGCGTGGTGCTGGGCGAGTCGATCAC CCGCATGCACCGCCTCAGCCAAAGCGCCAACGACAGCCGTGAACTGATCGAAGCCTTGAGCCAGCGCAGCGAAGACATCCAGCGGGTGGCGCTGGTGATC CAGTCGATCGCCAGCCAGACCAACCTGCTGGCGCTGAATGCCGCCATCGAGGCGGCGCGGGCCGGGGAGCACGGGCGCGGGTTCGCCGTGGTGGCCGATG AAGTGCGCGGCCTGGCCGGGCGCACGGCCACCGCCACCGACGAGGTCGGGGTGATGGTCGGCGATATCCAGCAGCGCACCGCCCAGGTGGTGGAGCAGAT CCGCCAGCTGTCCAGCGACCTGAACACCGGGGTGGAGCAGGTCGAGTCCACCGGCCAGCATTTGCAGAACATCGCCCGGCTGGCGGCGGGGGTGGAAAGC CAGGTCGGCGAGATCGCCCGCGGCGCCGAGACCAATCGCCAGCAACTGGACAGCCTGTTCCATGCCGTGGAGCAGGTGCGCGGCGACCTGGCGGTGAGCG ACCAGCAGACCCGTAGCCTGGCCGAGGCGGCGGTGCAGATGGAAGGGCAGGCGGAAATCATCAGCGAACGCCTGGCCGAGGTCGGCCTGGACGACTATCA CCAGCGCATCTACGACCTGGCCCAGGACGGCGCGCGGCGCATCGCCGAGCAGTTCGAGGCGGACCTGGACGCCAGCCGCATCAGCCTCGACGACCTGTTC GACCGCAGCTACCAGCCGATCGCCAATACCCAGCCGGTGAAATACCAGACCCGCTTCGACCGCTACGCCGATCAGGTGCTGCCGGCGATCCAGGAGCCGT TGCTGGCGCGTCACGAAGGCCTGGTGTTCGCCATCGCCTGCACGCCCCAGGGCTACGTGCCGACCCACAACCAGGTGTTCTCGCAGCCGCTGACCGGCGA CCCGCAGCTGGATACCCTGCACAACCGCACCAAGCGCAAGTTCGAGGACCGCACCGGCATCCGCTGCGGCAGCCACCAGCAGCCGCTGTTGCTGCAAACC TACACCCGCGATACCGGCGAACTGATGCACGACCTGTCGGTGCCGATCAGGGTCAAGGGCCGGCATTGGGGCGGCCTGCGCCTGGGCTACAAACCGGAGC AGGCTGTCGAGGCCGTGCGCGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCGAGCGGGCCGGTCATTGTTACCGGCCCTGCAACGAAGCTGTGCAAGAGATGGCTTTTTCCCAGCATGGGAACTCATTAGTATGGCGACATTGTTAG CTAGCTAACTAGTTGCCAGGAGAAGTCCTCATGCAAAGCAAAGTCGATGTCGCAGTGATGATTGGTAGCGGTGTACCGGCCACCTTTCGCGCGGTCGGGC TGAATGTGTGCTGGGTCGTGCTGGTCAATGGCGAGCGCCGCGGCGCGCCGTTCGCCAGCCGGGAGGAAGCCGTGGAATGCCAGGCGTCCTGGCTGGCCCA GCTGGCGCGGGACAAGGCCGGACACCCGCTGTTCAGTCGTTCGGCCTGAGGGCGCAGGCACCCGCGCCTTCAGACCTCGCTGCCGATCACCGCGCTTTCG GCCTGGAACAGTGCCACCTGGGCCATCGACAAGGCGCTGCTGGCGGCCTGCGCCTGGGCCCGGGCGGCGGACAAGGCCTGCATGTGCGCGTCGGTGGCGC
|
|
| Amino Acid Sequence |
>methyl-accepting chemotaxis protein
MTQDGSLSAATAQPLPTAQATRRWQVPALQSSALLLVLYALSHGLLSFYLAVPLMLLIVWLPRLARPKAAAPASSVDNNEIAALTRDLSYSTSHNALSAA GVAYSVRQLAGRVQSQLDSAARIVSSAEAMIHTEQLAAQLSQQALSAASEAHRSSAEGSVVLGESITRMHRLSQSANDSRELIEALSQRSEDIQRVALVI QSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTATATDEVGVMVGDIQQRTAQVVEQIRQLSSDLNTGVEQVESTGQHLQNIARLAAGVES QVGEIARGAETNRQQLDSLFHAVEQVRGDLAVSDQQTRSLAEAAVQMEGQAEIISERLAEVGLDDYHQRIYDLAQDGARRIAEQFEADLDASRISLDDLF DRSYQPIANTQPVKYQTRFDRYADQVLPAIQEPLLARHEGLVFAIACTPQGYVPTHNQVFSQPLTGDPQLDTLHNRTKRKFEDRTGIRCGSHQQPLLLQT YTRDTGELMHDLSVPIRVKGRHWGGLRLGYKPEQAVEAVRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|