Pseudomonas chlororaphis O6, PchlO6_1560 (cupB5)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.160.20.10 | - | IPR012334 | Pectin lyase fold | 54 | 437 | 2.1E-83 |
| PANTHER | PTHR12338 | AUTOTRANSPORTER | - | - | 1 | 372 | 1.1E-63 |
| Pfam | PF05860 | TPS secretion domain | IPR008638 | Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain | 53 | 301 | 3.0E-43 |
| SMART | SM00912 | Haemagg_act_2a | IPR008638 | Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain | 51 | 165 | 1.7E-42 |
| Gene3D | G3DSA:2.160.20.110 | - | - | - | 501 | 673 | 1.3E-17 |
| Gene3D | G3DSA:2.160.20.110 | - | - | - | 846 | 998 | 5.3E-18 |
| Pfam | PF07581 | The GLUG motif | IPR011493 | GLUG | 737 | 762 | 3.3E-4 |
| Pfam | PF13018 | Extended Signal Peptide of Type V secretion system | IPR024973 | ESPR domain | 1 | 46 | 8.8E-10 |
| NCBIfam | TIGR01901 | JCVI: filamentous hemagglutinin family N-terminal domain | IPR008638 | Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain | 87 | 161 | 5.3E-26 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | IPR011050 | Pectin lyase fold/virulence factor | 47 | 339 | 6.59E-49 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.