Pseudomonas chlororaphis O6, PchlO6_1433
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGATACCGCCGTCGCGCGCCGCCTCGGACGAATAGCGCTGGCTATTGCCGATGATCTGGTGGTTCGCCGCCTTGAGGTTGAAATAAGGCTTGCCGTCC TTGGAGACTTCCTTGGCGTAGCGGGCCTCGTTGGGGCTGTTGGTCTGCACCGAAGCGATGCCGTTTTCGGCGGCGCTGCGGGAGGAATACAGCTCACTCG TCAAAATGGTTTCAGCATTGCCAGCCTTGAGAACGAAGCGGAACTGCCCGTCACTGCTTTTGCTTAATTCATACCATCCAGCCATGGTCCTGCTCCTGAG TGTCCAAAGATGCGAATGCACTTCGGATTAAAGCTTGTCTTTGCCGGTTTACCAGCGTTTGGGGTGTGTTGCTGAGGCACGCAGCATCAGACAGGAAAAA TCGCATCCGGTTCATGAAGCGAAACTCATGCAGACAAATAGTAATAATTCTCGATATCATTCGCGACCTTTCTGCCCGGCAGTACTTGCGAAGGATTTTC
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| DNA Sequence for Gene |
>PchlO6_1433
ATGTCTCGCTTCAAGCCCGACCCCACCTCGGCGGACCTCGTCCGCGGGTTCTATGCGGACATCCTGCATTACCTGCGTAAACGCACGGACAACGCCAGCG ATGCGGCGGACATGACCCAGGACGTCTTCACCCAATGGCTCGATTACCGCGACCGGGCCAAGGTCGAACAACCCCGCGCCTTTCTGTTCCAGATGGCGCG CAACCTGCTGCGCGATCACTGGCGCCGGCAGAAGGTCAGGCACAAGGTGCACCACGAACCGCATGCAACAGAACCCGAGCCGCTGGCCGACGAACACCAC GAGCCACTGCCCGCGGCCCAGCGCCTGCAACGCCTGGAGCGCTTGAAGAGCGTGCTCGCCGAACTCTCGCCGCGCCGCCGCGAAGCCCTTATGCTGCACC GCTTCGAAGGCCTGAGCCAGGCGCAGATCGCCGAACGCATGGGCATCTCCCTGAGCATGGTGGAAAAACACATCGCCTTTGCCCTGCTGCACTGCAAGCA GCGCCTGGAACAGGAACACGGCAAGGAGCAAGCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGCCCCCACGACACCGAGCAGCAGATCGACAGCATCGATGCCCAGGCGGCCGGCTGGTTCACCCGCAATCGCGAGGACCACAGCCAGGCCACGCGCGA CGCCTTCGCGGCCTGGTCCAGCGAACCGGCCCACACCCGGGCTTATGCCGAGTTCGAGCGCTTGTGGGCCGACCTGGCCGAACTCGAACCACTGAACCGA CCGACGCCGCTGCCGCTGAGCAAAAAGCCGCGCTGGCGTCCGGCCCTGGCGGTGGCCGCCGCGCTGGTCTGCGCATTGCTGGCCATCGAACTGGGTGCAC CGCCGGCGATCTATTCGCAGCAGATCGCCGCGCAACGCCAGGGCATGCGCAGCTTCAACCTGCCCGACGGCAGTACCCTGTACGTCAACGCCAACACCCG TTTGCGCATCGACTTTACGGCGCAGCAACGCAACCTCTATCTGGACCGGGGCCAGCTGTATCTGGAAGTCGCCGCCGACAAGGAACGGCCGCTGTGGGTG
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| Amino Acid Sequence |
>RNA polymerase sigma factor
MSRFKPDPTSADLVRGFYADILHYLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRRQKVRHKVHHEPHATEPEPLADEHH EPLPAAQRLQRLERLKSVLAELSPRRREALMLHRFEGLSQAQIAERMGISLSMVEKHIAFALLHCKQRLEQEHGKEQAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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