Pseudomonas chlororaphis O6, PchlO6_1322 (rimO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01125
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016740 transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01125
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01125
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0035596 methylthiotransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00919
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0018339 peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01125
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01125 JCVI: 30S ribosomal protein S12 methylthiotransferase RimO IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 11 292 5.9E-112
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 149 293 8.5E-19
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 99 286 7.0E-18
Pfam PF00919 Uncharacterized protein family UPF0004 IPR013848 Methylthiotransferase, N-terminal 11 99 4.7E-21
Gene3D G3DSA:3.40.50.12160 - IPR038135 Methylthiotransferase, N-terminal domain superfamily 11 129 1.2E-27
PANTHER PTHR43837 RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 8 293 1.0E-116
SFLD SFLDG01082 B12-binding domain containing - - 99 286 7.0E-18
Gene3D G3DSA:3.80.30.20 tm_1862 like domain IPR023404 Radical SAM, alpha/beta horseshoe 141 300 9.6E-42
SUPERFAMILY SSF102114 Radical SAM enzymes - - 113 292 1.96E-29
FunFam G3DSA:3.40.50.12160:FF:000002 Ribosomal protein S12 methylthiotransferase RimO - - 11 128 4.6E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.