Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCAGCGTCGCCTGAACGCGCGCAGCGTGTTGCTGGCCGTCCCGGAACCCTTGCTGAGCCGCTTGATGCTCGCGGCCCAGGCCGGCGTGCTGCGCCTGGCG GTACGCAGCGCCGACGAGAAACGCCTGGCGCATTACTGGGCGGGCGAAAAAAGCGCATCGAAGCATCTGCAAAACGCCGACAGATCCTTGATCCAGTTCA ACCAGCTGGCCCTGTCCACCTCCCCTCCCTCCACCGGCAGAACCTTCGACGCCGCAGCGCGTCGCGCCCAGATAGAAGTCATACGCGGCATCGAAGCGAG CCAACAAACACCCTGATCATGCAAGGACACTTCTTCATGTCCAATGATTCCCAGCCCCTGTGCAAAGGCCTGATCCGGGCCCTGATGTCGAGCGGTGTGC CTGTCGAGGGCGACGTACCGCTGCACAACCACGACCCGGACGGGTGCCGCCCGTACTCCCTGGAAAACCGCAACTTCAATCAACGCAGTGGGCTATCGCA
|
|
DNA Sequence for Gene |
>PchlO6_0683
|tadZ
ATGAGTCAGAACCTGAGCCAGACCTTCCTCGCGATCCCCCGCAACGGCACCGACCTGGAATGGCTGCAAGGCGCCCTGGCGCCACTCGGGCAGGTGGTCA GCGCGGGCAGCGGCAGCCTCGACGAGTTGCTGGCGCTGGTGGATGTGACGTGCGCCAGCCTGGTCTTCGTCGGCCTCGATCGCGAGCATGTGGTCACCCA GGCGGCGCTGATCGAGGGCGCGCTGGAGGCCAAGCCGATGCTGGCCATCGTCGCCCTGGGCGACGGCATGGACAACCAGCTGGTACTCAACGCCATGCGC GCCGGGGCCCGCGACTTCGTGGCCTACGGCTCGCGCTCCAGCGAGGTAGCCGGCCTGGTACGGCGCCTGAGCAAACGCCTGCCCCAGGTCACGCCAAGCA CCCAGCTCGGCGGCCTGACCGTGCTCTACGGCACCCAGAGCGATGCCGATGGCGCCCTGCTCGCCAGCCATCTGGCGCTGGTGGTGCAGAAGAGCGGCCA GCAGACCCTGTTGCTCGACCTCGGCCTGCCGCGCGGCGACAGCCTGGCGCTGCTGGGGCTGGAAAGCTCGTTCCACTTCGGCGATGCCTTGCGCCATCTG CGGCGCCTGGATGCGACCCTGATCGACAGTGCCTTCACCAGCACCGAAGCCGGGCTGCGGATCCTGGCCTACGCCGGCCATGACGAGCCGCTGGAGCGCA CCAGCGCCGCCGAGCTGTACATGCTGCTCAGCGCCCTGCGCCAGCATTTCCAGCACATCGTGGTGAACCTCACCGGGCAACCGGACAGCGAAGCCCTGCG CACCTTCGTCGGCCATTGCGACAAGTTGCTCTGGTACACCGACCAGAGCGTGCTCGACTGCCGCCGCAACCTCGCGGTGCTCAACCTCTGGCGCGAAAAA GGCATGAAGCTGGAACACGCCCGCCTATTGGTCGACCGCTACCTGCGCGGGGTCGCGCCGGATGCGGAAACCCTGGGCAAGAGCTTTGCCCTGGAAGTGA TCGCGGTCCTGGCCTACAGCCCCGAGGTGCGTCTCAACGCGAAAAACCAGGGCGTCACCCTGTTCGAACTGGCCCCCCGCGAAGGCCTCACCCAAGCCCT GAAGACCCTCGGCGAGCGCCTGGCCAGGCGCTCCCAAGGACTGCCCACGGCAAGGCCCGGCTGGTTCGAGCGCCTCAGGGGAAGTCGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCACAGAAAAACTTTTTGGCGCCCAGCCCCACAGCCCCATCGGCAACACCGATCACGAAGGCCTGAAACTGGTGCTGCATCGCTACGTCATCGACGCCAT CGAGGAGTCGGGAAAAAACCTGCTGGAAGGTTCGCGCCAGGCACTGGCGCGCTTCATTACCGACAAGGTGGCCGAGTACATCTCCCGCCTGCACCTGGCG ATTTCCCGCTATGAAATGGAGCGCCTGGCCGAAGAGCTGGTGGACGAGCTCACCGGTTTCGGCCCGCTGGAAGTGTTGCTGCGCGATCCGGCGGTAACCG AGATCCTGGTCAACGGCCCGCACCGGGTGTTCGTCGAGCGCGATGGCGTGCTGCACCAGAGCGACCTGCGCTTCATCGACGCGCACCATGTGGAGCGGGT CATGCAACGCATCCTCGCGCCCCTGGGCCGACGCCTCGACGAGTCCTCGCCCATGGTCGATGCCCGGCTGCCCGACGGCAGCCGGGTCAACGCCATCATC
|
|
Amino Acid Sequence |
>Flp pilus assembly protein TadZ
MSQNLSQTFLAIPRNGTDLEWLQGALAPLGQVVSAGSGSLDELLALVDVTCASLVFVGLDREHVVTQAALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPQVTPSTQLGGLTVLYGTQSDADGALLASHLALVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDATLIDSAFTSTEAGLRILAYAGHDEPLERTSAAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVGHCDKLLWYTDQSVLDCRRNLAVLNLWREK GMKLEHARLLVDRYLRGVAPDAETLGKSFALEVIAVLAYSPEVRLNAKNQGVTLFELAPREGLTQALKTLGERLARRSQGLPTARPGWFERLRGSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|