Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AAATTCCTGTTCATCTACATCGTGCTGTTCATCGTGGTGCTGCTGGTGCTCTACATCAAGCACCGGCTGACCCGCATGCCGGTCGGCCGGGCCTGGGAAG CGCTGCGCGAAGACGAGATCGCCTGCCGCGCCATGGGCCTGAACCATGTGCTGGTGAAACTCTCGGCCTTCACCATCGGCGCCTCGACCGCCGGCCTGGC CGGGGTGTTCTTCGCCAGCTACCAGGGCTTCGTGAACCCCTCGTCCTTCACCTTCTTCGAGTCGGCGCTGATCCTGGCCATCGTGGTCCTGGGCGGCATG GGTTCGACCGTCGGCGTGGTGATCGCGGCGTTCGTGCTGACCGTGGCGCCGGAGCTGCTGCGCAGTTTCTCCGAGTACCGGGTGCTGCTGTTCGGCATCC TCATGGTGTTGATGATGATCTGGCGACCCCGGGGCCTGATTCGTATCAGCCGCACCGGCGTGACCCCGCGCAAGGGTGCCTTGACCGAGAGGAGCGCATC
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DNA Sequence for Gene |
>PchlO6_0595
|livG_1
ATGAGCGATGAAGTGATCCTGAAGGTCGAGAACCTGATGATGCACTTCGGTGGCATCAAGGCCCTGAGCGACGTCAGCCTGGAGGTCAAGCGCAACTCCA TCTTCGCCCTGATCGGCCCCAACGGTGCCGGCAAGACCACGGTGTTCAACTGCCTGACCGGTTTCTACAAGGCCACGGGCGGGCATATCGCCCTGAATAC CCGGGGCACGCCGACCAATGTCATCAAGCTGCTGGGCGAGCCGTTCCGGGTGACCGACTTCGTGTCGCCCAAGCGCTTTGCCAGCCGGCTGTTCTACAAG ATGTTCGGCGGTACCCACCTGGTGAACCGGGCGGGCCTGGCACGGACCTTCCAGAACATTCGCCTGTTCAGGGAAATGTCGGTGCTGGAGAACCTGCTGG TGGCCCAGCACATGTGGGTCAACCGCAACCTGCTGTCCGGCATCCTCAATACCAAGAGTTACCAGAAGGCCGAAAGCGATGCCCTGGACCACGCCTTCTA CTGGCTGGAAGTGGTGGACCTGGTGGACTGCGCCAACCGCCTGGCCGGCGAGTTGTCCTACGGCCAGCAACGCCGCCTGGAAATCGCCCGCGCCATGTGC ACCCGGCCGCAGATCATCTGCCTCGACGAACCGGCCGCCGGCCTCAACCCCCAGGAAACCGAAGCGCTCAGCGCGATGATCCGGCTGCTGCGCGACGAGC ACGACCTGACCGTGGTGCTGATTGAACATGACATGGGCATGGTGATGAGTATTTCCGACCATATCGTGGTGCTCGACCACGGCAACGTGATCGCCGAGGG CGGGCCCGAAGCGATCCGCAACGACCCGAAAGTGATTGCCGCCTACCTGGGTGCGGACGAAGAGGAGCTGGTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGACTGCACCTATCCTCGAACTCAAGGACCTGGACGTGTACTACGGGCCGATCCAGGCCCTGAAGAAAGTCTCGCTGCACATCAACGAAGGTGAAACCGT GAGCCTGATCGGCTCCAACGGTGCCGGCAAGTCCACGCTGCTGATGTCGATTTTCGGCCAGCCGCGGGCCGAGTCCGGGCAGATCATCTATCGCGGTGTG GACATCACCCACAAGTCCTCGCACTACATCGCCTCCAACGGCATCGCCCAGTCGCCGGAAGGGCGCCGGGTGTTTCCGGACATGACGGTGGAAGAGAACC TGCTGATGGGCACCATCCCCATCGGCGACAAGTACGCCACCGAAGACATGCAGCGCATGTTCGAACTGTTCCCGCGGCTCAAGGAACGTCGGACCCAGCG GGCCATGACCATGTCCGGCGGCGAGCAGCAGATGCTCGCCATCGCCCGCGCGCTGATGAGCCGTCCCAAGCTGCTGTTGCTGGACGAACCGAGCCTGGGA
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Amino Acid Sequence |
>amino acid ABC transporter ATP-binding protein
MSDEVILKVENLMMHFGGIKALSDVSLEVKRNSIFALIGPNGAGKTTVFNCLTGFYKATGGHIALNTRGTPTNVIKLLGEPFRVTDFVSPKRFASRLFYK MFGGTHLVNRAGLARTFQNIRLFREMSVLENLLVAQHMWVNRNLLSGILNTKSYQKAESDALDHAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMC TRPQIICLDEPAAGLNPQETEALSAMIRLLRDEHDLTVVLIEHDMGMVMSISDHIVVLDHGNVIAEGGPEAIRNDPKVIAAYLGADEEELV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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