Pseudomonas chlororaphis O6, PchlO6_0520 (msbA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCAGCATTGTTGCTGGCAATGTCGGCGTTCTGGTTTCTCGAGCCTTTGGTCCTGGCGCGTGGCGTTTCCTTTCGCCCGCAGATCCTGATGGCCAGCCT GCAGATGATCGCCGAACATCCATGGACAGGCCTCGGCCTGGGTTCAGGCTATAGCGTGCATGCCGAAGGGCAGGCTTTCGATCATGCCCATAACCTGTTC AGCCACATTGCCATCGAACTGGGGATTCCTGGGCTCTTGCTCTGGGTCGTGGCCTGGTTTGCAGCGCTGCGCGAAGCCTGGCGCGCCCGTGAAACGCTCT ATGGCCGGGGCGTCATCGGCATCTGGCTGTTCTCCTTCCTGGCCATGCAGTTCGATGCCGCCAGCCTGACCGGAACCCCTCGCGCCGAATGGTTCATCAG TTGGCTGCCGATCGGTCTGGCTACTGTTTTGGTCTGGGCGCGGGGCAGTCACACAGGCTGTGATAAAATCCCGCGTTCCTCCTAAACAGTGAGCTCGACG
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| DNA Sequence for Gene |
>PchlO6_0520
|msbA
ATGAGTGACGCACCGCGTAAAGCGGAACAGGACTCCAGCCTGAAAATCTATTTTCGGCTGTTGGGGTATGTAAAACCCTACATTGGCATTTTCCTGCTGA GTATCGTGGGCTTCGTGATATTTGCCTCCACCCAGCCGATGCTGGCGGGCATTCTCAAATATTTCGTCGACGGCTTGAGCAATCCCGAAGCGGTGCTCTT CCCCAACGTTCCCTATCTGCGCGACTTGCAGCTATTGATGGCGGTACCGCTGCTGATCATCCTGATCGCGGCCTGGCAGGGGTTCGGCTCCTTCCTCGGC AACTACTACCTGGCGAAGGTTTCCCTGGGGTTGGTGCATGACCTGCGGGTCGAGCTGTTCAACAAGCTGCTGGTGCTGCCGAACCGCTATTTCGACACCC ACAACTCCGGGCATCTGATTTCCCGCATCACCTTTAACGTCACCATGGTCACCGGTGCCGCCACCGACGCCATCAAGGTGGTGATTCGTGAAGGCCTGAC GGTGGTGTTCCTGTTCGTCTACCTGTTGTGGATGAACTGGAAGCTGACCCTGGTGATGCTGGCGATCCTGCCGTTGATTGCGGTCATGGTCGGCAGCACC AGCAAGAAATTCCGCAAGCAGAGCAAGAAGATCCAGGTGGCGATGGGCGATGTGACCCACGTGGCCTCCGAGACCATTCAAGGCTATCGCGTGGTGCGCA GCTTCGGTGGCGAAAGCTACGAGCAGCAGCGTTTCGTCGACGCCAGCCAGAGCAACACCGACAAGCAGCTGCGCATGACCAAGACTGGTGCGGTCTACAC GCCGATGCTGCAGTTGGTGATCTACTCCGCCATGGCGGTGCTGATGTTCCTGGTGCTGTTCCTGCGTGGCGATGCCACCGCGGGCGACCTGGTGGCCTAC ATCACCGCGGCGGGCCTGCTGCCCAAGCCGATTCGCCAGCTCTCGGAAGTCAGTTCGACCATCCAGAAAGGCGTGGCGGGCGCGGAAAGCATCTTCGAAC AGCTGGACGTCGAGCCTGAGGTCGATCGGGGCCAGGTCGAGCGTGAGCGCATCGAGGGTCGCCTGGACGTGCGCAACCTGAGCTTCACCTATCCGGGCAC CGACCGTGAAGTGCTGAAGGACATCAGTTTCTCCGCGGCTCCCGGGCAGATGATCGCGCTGGTCGGCCGCTCCGGCAGCGGCAAGTCGACCCTGGCCAGC CTGATTCCACGCTTCTATCACCATGAGACGGGGCAGATTCTCCTCGATGATGTGGAGATCGAGGATTACCGTCTGCGCAACCTGCGCCGGCATGTGGCCC AGGTGACCCAGCATGTGACCCTGTTCAACGACAGCGTGGCCGCCAACATTGCTTATGGCGATCTGGCCGGGGCGCCGCGGGAAGATATCGAGAAGGCGGC GGCGGATGCCTATGCCATGGATTTCATTTCGCAGCTGCCCGAAGGCCTGGACACCCAGGTCGGCGAGAACGGCGTGCTGCTCTCCGGCGGTCAGCGCCAG CGTCTGGCAATTGCCCGGGCCCTGTTGAAAAATGCGCCGTTACTGATTCTCGACGAAGCCACCTCGGCCCTGGATACCGAGTCCGAGCGGCATATCCAGG CGGCCCTGGACAAGGTGATGAAGGGGCGCACCACCCTGGTGATCGCACACCGCCTGTCGACCATCGAGAAGGCCGACCTGATTCTGGTCATGGACCAGGG GCGGATCGTCGAGCGCGGCACCCATGTCGACCTGCTGGCGCAGAACGGCTACTACTCGCGCCTGCATGCCATGGGCCTGGACGAGCCTGCGTCCGAAGGC ATTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGAGCTTCAGGGTGGGCACTGCCCATCCTGGAACGACCCCGGCGTGCAATGCGCCGGCCGGTCTTTGTATCCCGCCCCTTACAGTCTTGACCAAGCCTA AATAATTCCGCGTCTCGTGCTTGTTATGGTTCCAGCCTCAATCGTCGACTGAATCGAGGGGGCCAACCCCGTCGCGCGGGTACTGGAATGCTGCAACGTT ATCTGTGGAAGTTATTGCCCAAGTCGCAACGGGCCTTCTTGCTTGGGCGCCTGTCTGTGGTGGACCGGCAGGTGGTGAACAAGGTCATGTCCGCCAACGT CCGTTTTCCGGAGCCGTTCCGTCAGCACGGTTGTGTGTTCATCCATGTGCCCAAGTGCGCCGGGAGCAGCCTGTGTTCAGCATTGTTCGACGGCTGGACA CCAGGCCATCTGCCCCTGTACTGGTACGAGCAACAGTTTCCCCAGCAGTTCGCCAGCAGTTTCAAGTTCGCCGTGGTCCGCGATCCTCTGGAGCGGGCCT
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| Amino Acid Sequence |
>ATP-binding protein
MSDAPRKAEQDSSLKIYFRLLGYVKPYIGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNVPYLRDLQLLMAVPLLIILIAAWQGFGSFLG NYYLAKVSLGLVHDLRVELFNKLLVLPNRYFDTHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFVYLLWMNWKLTLVMLAILPLIAVMVGST SKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGESYEQQRFVDASQSNTDKQLRMTKTGAVYTPMLQLVIYSAMAVLMFLVLFLRGDATAGDLVAY ITAAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDVEPEVDRGQVERERIEGRLDVRNLSFTYPGTDREVLKDISFSAAPGQMIALVGRSGSGKSTLAS LIPRFYHHETGQILLDDVEIEDYRLRNLRRHVAQVTQHVTLFNDSVAANIAYGDLAGAPREDIEKAAADAYAMDFISQLPEGLDTQVGENGVLLSGGQRQ RLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHVDLLAQNGYYSRLHAMGLDEPASEG IA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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