Pseudomonas chlororaphis O6, PchlO6_0288 (ompR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis O6 chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGCTGCCGGTCACTTCCTTACGGTAGCGGGCGATGAAGGGCACGGTGGAGCCTTCATCCAATAGAGCGACGGCCGCTTCGACCTGTTGTGGGCGTAC ACCGAGTTCCTCGGCAATGCGGCTGTTGATGCTGTCCATAAAACCACCTGACAAATTGTGAAAGCAGGCTCGCCGGCACGGAAAATTGGGCTCGGCGAGT CTGGTTGAGCGGCCTGGCGTGCGCCGCTGCCTGGATCAAAAGGCTGCCTGTTGACCCGTGAAATCGAACAATTACTGCCTGGCCGGGAAAAATAAAAAAT GGCCACGGGCGATAACGATCAGACGTTGCCTGACACAAAAGGCGGCGCATTATAACCAGCGTTCCAGTCTTCGGGGGTATCGGCCCGGTGGCGGCCGACG GCGGGTTTTCTGGCGGTCGAGGAAAAATCTGCTAACAATGCACACGGTGCGTATAACGGCAGCTACGCCATAATGCGCACCGAGATAAAAGGAGCATCTG
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| DNA Sequence for Gene |
>PchlO6_0288
|ompR
ATGAGCAGCACTGCACAAACTGCCGAAGGCGAAAAAATTCTTATCGTTGACGACGACCCGGGGCTGAGCAGCCTGCTGGAGCGCTTCTTCGTCAGCAAGG GCTACCGTGCCCGCGCGGTTCCCAACACCGAGCAGATGGACCGTCTGCTGGGGCGCGAAGTCTTCAACCTGGTTGTCCTCGACCTGATGCTGCCTGGCGA AGACGGCCTGACCGCGTGCCGCCGCCTGCGCAGTGCGAACAACCAGATTCCGATCATCATGCTCACCGCCAAGGGCGACGAGCTGAGCCGCATCAAGGGC CTGGAACTGGGTGCCGACGATTACCTGGCCAAGCCGTTCAACCCCGACGAACTGATGGCGCGGGTCAAGGCCGTGCTGCGTCGCCAGTCGGCGCCGGTGC CGGGTGCGCCGGGCAGCGAAGACGAAAACGTCACCTTCGGCGACTACGAGCTGTCCCTGGCCACCCGCGAGCTCAAGCGCGGCGCCGAAGTGCACATGCT CACCACCGGTGAGTTCGCGGTGCTCAAGGCCCTGGTGATGAACGCTCGCCAGCCGCTGACCCGCGACAAGCTGATGAACCTGGCCCGTGGCCGCGAGTGG GATGCACTGGAGCGTTCCATTGACGTGCAGATCTCCCGCCTGCGCCGGATGATCGAGCCCGATCCGTCCAAGCCGCGTTATATCCAGACGGTCTGGGGTG TGGGTTATGTGTTCGTGCCGGATGGCACCACCACCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGATGATTTGTAGGAGCGAGCGCCCGGGCCGGCAAACGACCCGGGCGCTCGCATTCCGCAACTCTGCGAGCGCGACTCGCTCCTGCAAAGCGTGTAATG GCTGTTTATGAAAACCCCGCTGTGGTTCCCGCAAAGCTTCTTCTCCCGCACCCTCTGGCTGGTGCTGATCGTGGTGCTGTTCTCCAAGGCGCTGACCCTG GTTTATCTGCTGATGAACGAGGACGTGCTGGTGGACCGCCAGTACAGCCACGGCGTGGCCCTGACCCTGCGCGCCTATTGGGCCGCCGACGAATCCAACC GCGACCAGATCGCCGAGGCCGCCGGGCTGATCAAGGTAGTCGGCAGCGGTGTGCCGGCGGGCGAGCAGCATTGGCCCTATAGCGAGATTTATCAGCGGCA GATGCAGGCCGAATTGGGCGCCGACACTGAAGTGCGCCTGCGCATGCACGCCCCGCCGGCGCTCTGGGTGCGCGCACCGAGCTTGGGCGATGGCTGGCTG
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| Amino Acid Sequence |
>chemotaxis protein CheY
MSSTAQTAEGEKILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLTACRRLRSANNQIPIIMLTAKGDELSRIKG LELGADDYLAKPFNPDELMARVKAVLRRQSAPVPGAPGSEDENVTFGDYELSLATRELKRGAEVHMLTTGEFAVLKALVMNARQPLTRDKLMNLARGREW DALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDGTTTK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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