Pseudomonas umsongensis 20MFCvi1.1, D470_RS0124275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00011.11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGGCGAGCGTGACGCGGTGTTCAATGTTTACGAATCGCTACTGACCGAACCGCCGTCAGACCGATCGATTGTGGTCAGCCTGCTCGACAATCCGAAAA TCAAGACCACGGGCACCGTTCGGGAGGTCACGCCAGCGGTGTCCGCGCAGACCGGCACGGTGCAAGTCAAAGTCAGCCTCGATGGTCTCCCTGAAGGCAT GCAGCTCGGCTCGGTGGTGAGCGCCACGGCCAAGCCAGTGGGTAAAACCGCAGTGGAACTGCCCTGGGCGGCCCTGACCAAAAACCTCAGCGACCCGGCC GTGTGGCTGGTGGACGCCGAGGGCAAGGCGCAGTTGCACACGGTCACCGTTGGCCGTTACCTGACCGGCAAAGTCATTGTCAGCGCCGGCCTCACCGGTG GCGAAAAAGTCGTCACTGCGGGCGGCCAGTTGCTGCACCCGGGCGTACGGGTGGAGGTCGTCGAAAATACCGATCAGACCCCAACCACAGGAGCCCAACC
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| DNA Sequence for Gene |
>D470_RS0124275
ATGAAGCACCTGTTGCTGTTGTCCGCCGCTGTACTGCTGGTCGCCTGTTCCAAGGAAGAAGCGCCGCCAGAACCGGTGCGGCCGGTGTTGTCTGTGGAAG TGAAAGCGCTCCATCAAGAGGATCTCGGCCGGTTCGCCGGCAGCATTCAGGCCCGTTACGAAAGCAATGTCGGTTTCCGGGTGCCGGGGCGTATCGCCAG CCGCAATGTCGATGTCGGCGCCGAAGTCCAGAAAGGCGCCTTGCTCGCCACCCTCGACCCCACCGATCAGCAGAACCAGTTGCGCTCGGCCCAGGGTGAT CTGGCGCGTGTTCAGGCGCAGCTCATCAATGCCCAGGCCAACGCCCGGCGTCAGCAGGAGTTGTTCAATCGCGGGGTCGGTGCCCAGGCACAACTGGACA TCGCCCAGACCGAACTGAAAACCACCCAGGCGTCCCTCGATCAAGCCAGGGCCGCCGTCAACCAGGCGCAGGACCAACTCAACTACGTCGAGCTGCGCAC CGATCACAAAGCCATTGTCACCGCGTGGAATGCCGAAGCCGGGCAAGTGGTGACCGCCGGCCAGCAAGTGGTGACCCTGGCGCAGCCGGACATCAAGGAA GCGGTGATCGACTTGCCCGACACCCTGGTCGATGATTTGCCGGCCGACGTGGTGTTCCAGGTCGCCTCGCAGCTGGACCCGAGCATCACCAGCACCGCCA TCGTGCGTGAAATCGAACCCCAGGCCCAAAGCGCGACCCGTACCCGTCGTGCCCGCCTGAGCCTGACTGATACGCCACCGGGTTTTCACCTCGGCACGGC GATCAGCGTGACCCTCAGCTCCGCCATCAAGCCGCGCCTCGAACTGCCGGCGAGCGCATTGCAGGAGGTCGATGGGAAAACACGGATCTGGGTCGTCGAT CCACAGACGCAAACCGTTGCCCCAAGGGAGGTCAGCCTGGTCAGCCGGACCGACGACACAGTGGTCGTGGCCAACGGTGTGAAATCCGGCGAGCGGGTGG TCAGTGCCGGTGTGAACAGCCTAAAACCGGGGCAGAAAGTGAGAATTGATGAGGGCAGCCCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGAGTTTCAACTTATCCGAGTGGGCCCTCAAGCATCAGTCGTTTGTCTGGTATTTGATGTTCGTCGCGCTGTTGATGGGCGTGTTTTCCTACCTGAA CCTGGGCCGTGAAGAAGACCCGTCGTTCACCATCAAAACCATGGTGATCCAGACCCGTTGGCCCGGCGCGACCCAGGAAGAAACCCTCAAGCAGGTCACT GACCGGATCGAGAAAAAACTCGAAGAACTCGACTCGCTCGATTACGTGAAAAGCTACACCCGCCCCGGCGAATCGACGGTCTTCGTTAACCTGCTCGACA CCACCAGCGCCAAGGACATTCCGCAAATCTGGTATCAGGTGCGCAAGAAGATCAACGACATCCGCGGCGACTTCCCGCAAGGCCTGCAAGGGCCGGGCTT CAACGATGAGTTCGGTGACGTGTTCGGTTCGGTGTATGCCTTTACCTCTGACGGCCTGTCAATGCGCCAGCTACGCGATTACGTGGAACAGGTGCGTGCC
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| Amino Acid Sequence |
>RND transporter
MKHLLLLSAAVLLVACSKEEAPPEPVRPVLSVEVKALHQEDLGRFAGSIQARYESNVGFRVPGRIASRNVDVGAEVQKGALLATLDPTDQQNQLRSAQGD LARVQAQLINAQANARRQQELFNRGVGAQAQLDIAQTELKTTQASLDQARAAVNQAQDQLNYVELRTDHKAIVTAWNAEAGQVVTAGQQVVTLAQPDIKE AVIDLPDTLVDDLPADVVFQVASQLDPSITSTAIVREIEPQAQSATRTRRARLSLTDTPPGFHLGTAISVTLSSAIKPRLELPASALQEVDGKTRIWVVD PQTQTVAPREVSLVSRTDDTVVVANGVKSGERVVSAGVNSLKPGQKVRIDEGSPQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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