Pseudomonas umsongensis 20MFCvi1.1, D470_RS0103380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCGCGTGACCCACAGTCCGGCCAACCGACCGGTCAGCGTGTACACAAGCCAGTCGTGATCACCAAGGTCTACGACAAGTCTTCGCCACTGCTGCAAGC CGCCCTGACTTCCGGCGAGCGCATGAGCGAAATCGTTATCCAGTGGTACCGCACTTCGGCTCAAGGTACCCAAGAGCACTACTACACCACCAAACTGGAA GACGCGATCATCGTCGCCATCAACAACAAAATGCACAACTGCCAGGATCCGTCGAACTCGCACTTCACGCACCTGGAAGAAGTGCAGTTCACCTACCGCA AAATCACCTGGACCCACGAAGTATCCGGTACTTCGGGTTCCGATGACTGGCGTGTTCCAGTCGCTTAATCGCGGCTGACGGTTCCAAACATCGGCCAGCT CTGCTGGTCGATGTCATTTGCGCCTTCCAGGAATTTTCGCGTCCGTTGATCCGGCTTTCGGGTGTCAACGCGCGCCGCAGCACTGCACGAGGAACAAGGG
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| DNA Sequence for Gene |
>D470_RS0103380
ATGTTCGCGCCGGCCAATCAGACTCACTTTGCCCTGACTGTCGAAGGTCTGGAAAACGATCTCCAGGTCCTTGCCCTGCAAGGTCGGGAAGCCATCAGCC AACCTTTTGTGTTTGAGGTGGAGCTGGTCAGTGAGCAGCCGTCCCTGGACCTCGAAACGCTATTGCACAAACCGGCCTTCTTGCAGCTCTCGCCTGACGG CAGCGGCATTCATGGCCAGATCTACCGCGCCGCCCAGGGCGATTCGGGCAAACGCCTGACCCGCTACGCTGTGACCCTGCGCCCGCAGCTGTCCTACCTG GCGCACCGCATCAACCAACGCATCTTCCAGAACCTCACCGTGCCGAAAATCATCGGCATGGTCCTCGAAGAGCACGGCATCCAAGGCAATGCCTACGAAT TCAAAGTCGGGGCGATTTATCCCGAGCGCATTTACTGCGTTCAATACGATGAATCGGACCTGCAGTTCATCCAGCGCCTGTGCGAGGAAGAAGGTATCCA TTACCACTTCCAGCACAGCGCCACGGCCCACAAGCTAGTGTTCGGCGATGACCAGACGGTGTTCCCGAAACTCGCGCCCGTGGCCTATCAGCAAGACTCC GGCATGGTCGCCAACGACCCGGTGATCAAGCGCTTCGACCTGCGCCTGGAAACCCGCACCAGCCGCACCACCCGCCGCGATTACGACTTCGAAAAACCGC GCCTGAAACTGGAAAGCGAGAACCGTGGCGACGCCCTGCCCGACCTCGAAGACTACGACTACCCCGGCCGCTTCATCGACCGTGAACGCGGCAAGCACCT GGCCAAACGCGCCCTTGAGCGTCACCGCAGCGACTTCCAGCTCGCCGAAGGCCGAAGCGATCAGTCGTTGCTCGTCAGCGGCCACTTCCTGGCCCTGACC CAACACCCCAAGGCCAAGTGGAACGATCTGTGGCTGCTGACCGAAATCCTCCACGAAGGCAAACAGCCGCAAGTGCTGGAAGAGTCGGTGACCAGCAGCA CCACCAATCTGAAAGACGATTTCCACCAGGGCTACCGCAACCGCTTCCAGGCCACCCCCTGGGACGTGCCGAACCGCCCGCCGCTGAACCATCCCAAGCC ACGGATCCTCGGCAGCCAGAGCGCCGTGGTCACCGGGCCAAAAGGTGAAGAGATCCACTGCGACCAATACGGCCGCGTCAAAGTGCAATTCCATTGGGAC CGCGAAGGTCAGGCCGACGACAAGACCAGCTGCTGGCTGCGCGTCTCCTCCGCCTGGGCCGGCGCCCATTACGGCGGCATCGCCATTCCACGCATCGGCA TGGAAGTGCTGGTCAGCTTCCTCGAAGGCGACCCCGACCAACCGCTGATCAGCGGCTGTCTGTACCACAAGGAAAACGTCGTCCCGTACGCCCTGCCGGC GAACAAGACCCGCAGCACCTTCAAAACCCTGAGCTCTCCGGGCGGCGGCGGTTTCAACGAACTGCGCATCGAAGACAAAAAGGGCCAGGAACAGATCTTC CTGCACGCCCAGCGTGACTGGGACGAAAACGTCGAGCACGACCAGAAAATCCGCGTCGGCAACGAACGCCACGACACCGTCGAGCAAAACAGCTACAGCG AATTCAAGGCCGAAGAACACCATACCGTCTACGCCGACCGCAAAGTCGAAGCCCGCGCCAACGACCACCTCACCGTGGGCGTCAACCAGCACATCAAGGT CGGCACCGGCCAATTCATCGAAGCCGGCCAGGAAATCCACCTGAGCAGCGGCATGAAAGTCGTGCTCGAAGCCGGCAGCGAACTCACCCTCAAGGGCGGC GGCAGCTTCATCAAGATCGACGCCAGCGGCGTCACCCTCAGCGGCCCGGCGATCAACATGAACTCCGGCGGCAGCCCGGGTAGCGGCACTGGAGCGGCAC CGCTGATGCCTGGGGCACTGAAACAGGCTGATGCCGACAAGGCTGGCGCGGTACTGACGCCGGCGCAGATTAATACGCTGAAACGCAATGCGCCGTTCTG TGAAGAGTGCGAGAGGTGTAAGGCAGGTGTATGCGATATAGCAAAACCTGCCCAAGACACTGAAAAAACCAGCCACGACTTAGTATTTTTAGTCAATGAT GAAAAAACGGGTAAACCGAAGCAGAATATTCCCTATCGAATAACGCTTGAATCCGGGATTATTGTTGATGGTGTCACTGACAACAAGGGGATGACCCAAA AAGTCTCATCTAACAAAGCTGAAAAAGCCACTATCGAGGCCCCGTATTATGGCAACACAACAAGCGACGCTCACCCCAACCACGGATCAGACACCTGTAA CTGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATCCCGACCAAGGAGCTAAGCGGTACGCAATGGGTTGCACGATTTCCGACCAGTACAAGTGTGGGCGATCTCACGACTGAGTTCGAAGCCAGTGTGAAC AAATTTATTGCAGCGATAAAAGAAGCCGGGGGCAGTGTTTCAATTTCGGCAACTTATCGGCCCAAAGAGCGTGCTTATCTGATGCACTATTCCTCAGCAA TATCTAAAGGAATCATTGCACCAGAAGACGTACCTGAAATGGACGGTGTAAATATCGAGTGGGTTCATAGCACCTCAGCGCAATCAATCAGTGCTGCGAC CAGCATGGCGTCGGGCTACGGAATTGTGTATCCGCCGGCACTTACAAGTCGCCATACACAGCGAAAAGCCATAGACATGACAATATCCAACATGTCTGGA AAAACAATTGTAAATGCTTCTGGCGCCTCCGTTTTGATCACTCACTTAAGCGACTTGAATCCAGTAGGTACTACATATGGAGTTAAAAAGCTTGTTTCCG
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| Amino Acid Sequence |
>type IV secretion protein Rhs
MFAPANQTHFALTVEGLENDLQVLALQGREAISQPFVFEVELVSEQPSLDLETLLHKPAFLQLSPDGSGIHGQIYRAAQGDSGKRLTRYAVTLRPQLSYL AHRINQRIFQNLTVPKIIGMVLEEHGIQGNAYEFKVGAIYPERIYCVQYDESDLQFIQRLCEEEGIHYHFQHSATAHKLVFGDDQTVFPKLAPVAYQQDS GMVANDPVIKRFDLRLETRTSRTTRRDYDFEKPRLKLESENRGDALPDLEDYDYPGRFIDRERGKHLAKRALERHRSDFQLAEGRSDQSLLVSGHFLALT QHPKAKWNDLWLLTEILHEGKQPQVLEESVTSSTTNLKDDFHQGYRNRFQATPWDVPNRPPLNHPKPRILGSQSAVVTGPKGEEIHCDQYGRVKVQFHWD REGQADDKTSCWLRVSSAWAGAHYGGIAIPRIGMEVLVSFLEGDPDQPLISGCLYHKENVVPYALPANKTRSTFKTLSSPGGGGFNELRIEDKKGQEQIF LHAQRDWDENVEHDQKIRVGNERHDTVEQNSYSEFKAEEHHTVYADRKVEARANDHLTVGVNQHIKVGTGQFIEAGQEIHLSSGMKVVLEAGSELTLKGG GSFIKIDASGVTLSGPAINMNSGGSPGSGTGAAPLMPGALKQADADKAGAVLTPAQINTLKRNAPFCEECERCKAGVCDIAKPAQDTEKTSHDLVFLVND EKTGKPKQNIPYRITLESGIIVDGVTDNKGMTQKVSSNKAEKATIEAPYYGNTTSDAHPNHGSDTCNC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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