Pseudomonas umsongensis 20MFCvi1.1, D470_RS0103045

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00176
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004828 serine-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00176
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006434 seryl-tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00176
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00176
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006418 tRNA aminoacylation for protein translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 43 63 -
Coils Coil Coil - - 30 50 -
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 335 351 2.0E-33
Pfam PF02403 Seryl-tRNA synthetase N-terminal domain IPR015866 Serine-tRNA synthetase, type1, N-terminal 1 107 1.4E-30
PANTHER PTHR43697 SERYL-TRNA SYNTHETASE - - 1 425 0.0
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 318 331 2.0E-33
PIRSF PIRSF001529 Ser-tRNA_ligase IPR002317 Serine-tRNA ligase, type1 1 426 0.0
Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) 218 402 6.6E-36
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 105 425 0.0
Gene3D G3DSA:1.10.287.40 - IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily 1 104 1.4E-29
MobiDBLite mobidb-lite consensus disorder prediction - - 43 59 -
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 278 291 2.0E-33
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 266 278 2.0E-33
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 353 369 2.0E-33
Hamap MF_00176 Serine--tRNA ligase [serS]. IPR002317 Serine-tRNA ligase, type1 1 424 41.265713
NCBIfam TIGR00414 JCVI: serine--tRNA ligase IPR002317 Serine-tRNA ligase, type1 1 419 0.0
SUPERFAMILY SSF46589 tRNA-binding arm IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm 1 112 3.3E-30
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 116 420 2.28E-98
CDD cd00770 SerRS_core IPR033729 Serine-tRNA ligase catalytic core domain 120 419 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.