Pseudomonas sp. 45MFCol3.1, G368_RS0112930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 45MFCol3.1 G368DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATTCAATCGGTGGTCATGCTCGGGGAGCTGGCGGTGAACCGGGTGCTGGATAACCTCGATCCACAAGGCTAGCGAGGATCTGTGGCATAGGGGCTTGTT GTGGCGAGGGGGCTTGCCCCCGTTCGGCTGCGAAGCAGTCGTCAATCCGGTGTATGCGATTTCTCTGATACACCGCGGTTACAGGTTTTGGGGTCGCTTC GCAACCCAGCGGGAGCAAGCTCCCTCGCCACATGGGTGTGTCAGAGCACGGGGTGATCACAGGGCGCCGATGTTCCCTAAAGGGGCGCCCCGCACAACCA TTGCTCCCATCTGTAACACCCGCCATCGCGGACCTCGCCCCTCACAACATCCCCCTGACGCACCGCAACACCTCTACTTCAAGGCCTGACGATTAATTCA CGCCTCGGCCTGGAAACGGGCACGTTGATTGCTATATTTAATATCGTATACGAAATCCCCAATACGATATCCAACAGCACTTCACATCAACGAGGCCTCT
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| DNA Sequence for Gene |
>G368_RS0112930
ATGAAAAACCCCGCATTTGCCGTAGCCCTCAGCGCTGTTCTCAGTACCTCCTTCATTGCCACCGCCCAGGCCGACAAGCTCGACGACATCATCGGTTCGG GCAAGCTGCGCTGCGCCGTGACCCTGGACTTCCCGCCCATGGGTTTCCGCGATGCCGGTAACAACCCGGCCGGTTTCGACGTGGACTACTGCCGTGACCT GGCGAAAATCCTCGGGGTCGAGGCCGAAGTGGTCGAGACGCCGTTCCCGGACCGTATTCCGGCGCTGGTTTCCGGGCGGGCCGATGTGATCGTCGCCTCC ACTTCCGACACCCTCGAACGGGCCAAGACCGTCGGCCTCACGGTGCCTTACTTCGCCTTCCAGATGGTGGTGCTGACCCGCGACGACACCGGCATCAACA GCTTCGATGACCTCAAGGGCAAACCTGTGGGCAACACCAGCGGCACCTATGAGGCCATCGCGCTGGAGAAAGACGTGAAGAACTGGGGCACTGGCACCTT CCGCGCCTATCAGTCGCAGAACGACACCCTGCTGGCGGTCGCCCAGGGCCATATCGACGCCACCGTGGTCACCAACACCGTGGCCGCCGCCACTCTCAAA TCGGGCAAATACAAAAACCTGAAAGTCGCCGGTAACGCGCCGTACGTGATCGACTACGTCTCCCTCGGCGCCAAGCGTAACGAGTATGGCCTGCTCAACT ACCTCAACCTGTTCGTCAACCAACAGGTGCGCACCGGTCGTTACAAAGAGCTGTTCGTCAAATGGGTCGGCACTGAAATCCCGCCGACCAACCTGACCGT GCCCCAGGTCTACTACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGTCCGGCATGCCTAGGCCCACTTCTCTGACCGGTCGCAGCCTGGTCGCGGGCGCCGCCGAGGGCGCCCTGCTGTTCGCCGATATCGGGTTGAGTTTC TGGGGCGGGGTCGATCCGTTTAGCGGTGAGATCATTGACCGTCACCACCCGCTCAGCGGCGAACACCTGGCCGGCCGCGTGCTGGCCATTCCCAGCGGTC GCGGCTCGTGCACCGGCAGCAGCGTGTTGATGGAACTGATCAGCAACGGCCACGCACCGGCTGCATTGGTGCTGGCCGAACCCGATGAGATCCTGACCTT GGGCGTGCTCGTCGCGCAGACGATTTTCGAGCGCTCCCTGCCGGTGCTGTGCATCGGCCGGGAGGCCTTCGCCGCGTTGCGCGGCAAGGCCTTCGCTCGG GTCGACGGAGCCTCGGTAACCGTGTTCGAACACCTGCCGGGCGATGCCTGGCAGGCACTCGACAGCACATTGCAAACGCAAGACCCAAGCGCCCCGCTTG
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| Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MKNPAFAVALSAVLSTSFIATAQADKLDDIIGSGKLRCAVTLDFPPMGFRDAGNNPAGFDVDYCRDLAKILGVEAEVVETPFPDRIPALVSGRADVIVAS TSDTLERAKTVGLTVPYFAFQMVVLTRDDTGINSFDDLKGKPVGNTSGTYEAIALEKDVKNWGTGTFRAYQSQNDTLLAVAQGHIDATVVTNTVAAATLK SGKYKNLKVAGNAPYVIDYVSLGAKRNEYGLLNYLNLFVNQQVRTGRYKELFVKWVGTEIPPTNLTVPQVYY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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