Pseudomonas parafulva NBRC 16636 = DSM 17004, H619_RS0108450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGTGTAACCCACGACCATCTGCTGGGCGTTACGTTGAGCGGCCGCTTGCGCGTTCTGCTGGACCGGGAACAGGTCCGGCTCCTGGCTCCAGTACCAGC CAAGGCCAATGCAGACCAACAGGTACAACCCGACCAGGGTCAGCAGCGCACGGCTCCACAACCCGCCAAAGTAGCTACGGGCGGCAGCGCCGCGGCTGTC GGCACGCTCACGGGGCTCGGCTTTCGCCTCGCGGTTTTTCCAGTCCAGCATGGCTTTGTCCTTAATCAGTCACGACGGTTCAGGGGCTTGGACCACAGGC CTACGCCAGGGTGCCACGGCAAGCCCGCCTCGCTGCACTATAAAGCAGACACTGCCTTACGCATAAACGACTCATCAGTCATGAACTGAATAGTGATCCT GGTCATTTTGTTGACATGTGACACTCACCCTGCAATGAAGAGGTGCTAGCATAGAGCCATCACTGCCCCTGCATACCACAACCTACAAAGTAGCCAGGAC
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| DNA Sequence for Gene |
>H619_RS0108450
ATGAGCCAAGCAGTCGAGCCGAGCCCGCAGCGCCCCGCCCAGCAGCTCACGCGTAGCGGCCTGCGCAAGGATGACCCGCTCGACCAGGTACTGCTCGCGC CTGTGCGCAGGCCGGTCTACATCCTGCTGCAGGACCACGAGCGTGCCGAGCGCCTCGCGCAACAACTGGAATTCTTCGGCCTTGGCGTCCAGGCGTTGCC AACGGCTGATGCGTTTCGTGCCTCCTTCAGTGAATGCCCGCCGTCGGCGGTGATCATGGATGTCGATTTCAGTGGCGCCGGCCAAGGCCTGGCACTGGCT GCCGAGATCCAGGCCAGCCTGGTAAAACCCGTGCCGTTGCTGTTCTTCAGCCACCACGAAACCGACACCCCTACCCGCCTGGCTGCGGTAAGGGCAGGTG GCCAGGACTTTCTCACCGGCACCCTGGAGGCCTCCAGCCTGCTGGAAAAGGTCGAACGCTTGACCGACGCCGCCCCCTACGACCCGCTGCGGGTGCTGAT CATCGATGACTCGCGCACCCAGGCCTTGTACACCGAACGGGTACTGGCCGGGGCGGGCATGGTTACCCGCAGCCTGAGCGACCCGATTCGCACCATGGCC GAACTGGCCGACTTCCAGCCCGACCTGATCATCCTGGATATGTACATGCCCGCCTGCACGGGCCCGGAGCTGGCCAAGGTCATCCGTCACAACGACCGTT ACGTCAGCGTGCCGATCATCTACCTGTCGGCCGAAGACGACCTGGACAAGCAGCTCGATGCCATGAGTGAAGGCGGCGACGATTTCCTGACCAAACCGTT TCGCTCACGCCACCTGATCACCACCGTGCGCAACCGCGCCGCCCGCGCCAGGCACCTGAAGGCACGCATGGTGCGCGACAGCCTGACGGGCCTGTACAAC CACACACACATCCTGCAACTGCTCGAAGACTGCAGCTTCCGGGCGCGGCGTGAGTGCCAGCCGCTCAGCTTTGCCATGCTCGACATCGACCATTTCAAGA AGATCAACGACCGCCACGGCCACCCCATGGGTGACCGAGTGATCAAGAGCCTGGCGCTGTTCCTCAAGCAGCGGCTACGCAAGTCCGATTTCATTGGCCG TTATGGCGGTGAGGAATTCGCCATCGTCATGCCCAATACCGCCCTGGAGGCGGCGCACCAGGTGCTGGACGAGATCCGCCGGCGCTTTGCCGACATCCTG TACCCGGCCCAACCCCGGGACCTGCAGTGCACCTTCAGTGCAGGTGTGGTGCAACTGGATGACGGGCTGGACGCACTGACCATGGCCAGTGCCGCGGATG AAGCCCTCTACCGGGCCAAGCACGCAGGCCGTAACTGCGTGGTACGCGTAGAGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGGGACCTACGCAAATAGCGGCACTTTGCCACTTTTTTTGACGCCGGGCCTTTGTCGTCATCACCACGTCACAAAATCGCAATAACTTCAGGCGCCTA TCTCCCCCCTGCGCAGGAAGTGTGCGGCTATGCGCCTGAAGTGGCTGACCAATTTCAACACGCTGTTGCTGGTGACCGTGTGCATTGCGCTGGCGGCCAC GTTGTGGTGGTCGCAACGGGCGCTGGAACGCCCTTACCAGATGATGGAGCGCTACCTGGGCCTGTCCCAGCAGTTCCAGAACCAGGCGGCGCGCAATATC CAGGCCTACCTGGGCAGCGGCGATGCCCTGCGCCACGCTGCCGCGCTGGAAGCCACCCAACAGTTACAGGCGGGCCTGGCCGAATGGCCGGGCGAACTCG CCGACAAGCTGCAGCCTAGCCTGGATGGGCTGCAGGCCTTCACCGCCGGGGATCTGCTGGCGGCAGGCAAGCTGGCAGGCGACCCGCAAGCCCTGCTGCT
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| Amino Acid Sequence |
>diguanylate cyclase
MSQAVEPSPQRPAQQLTRSGLRKDDPLDQVLLAPVRRPVYILLQDHERAERLAQQLEFFGLGVQALPTADAFRASFSECPPSAVIMDVDFSGAGQGLALA AEIQASLVKPVPLLFFSHHETDTPTRLAAVRAGGQDFLTGTLEASSLLEKVERLTDAAPYDPLRVLIIDDSRTQALYTERVLAGAGMVTRSLSDPIRTMA ELADFQPDLIILDMYMPACTGPELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPFRSRHLITTVRNRAARARHLKARMVRDSLTGLYN HTHILQLLEDCSFRARRECQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLALFLKQRLRKSDFIGRYGGEEFAIVMPNTALEAAHQVLDEIRRRFADIL YPAQPRDLQCTFSAGVVQLDDGLDALTMASAADEALYRAKHAGRNCVVRVEP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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