Pseudomonas sp. 35MFCvi1.1, F571_RS0125805

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 35MFCvi1.1 F571DRAFT_scaffold00013.13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGCACCAGCTCCAGTCCCCAGACTGTCATCAGCTGTCGGTAGTCGCGCTGATACTGCTCACGCTCGGCGAACCACTGGCGGGCGGTGATACCCGACAATT GCTTGAGCAGATCTGCGTCGTTCACCGCAATGAAGTCCACCGCAATCGGGGTGTCGTCGTTGGCGCGGGGCGCGACGTCCAGCGTCAGGTTATCGAGATC GACGCGAGGACCGAACAACGAACACCCGGCGAACGACAGGAGCACAAGCAAAGAAAAAAGACGTGCGTACAAAATGAATTTTCCTTTTCTCGACACGGTC CAAAAACGTTTTTCGTTTGCTTTTTTATAGACCTGTTCTAGCGTCTTGGGTAGTTCGGTCGGCACGACGAATTCGGAAGGTTCGTCAAAGGAATGACAGG TCCTCTGCCCTCCCTTTCTAACCTACGGTCCAGTAAGGGAATGCGATGAAACGGGCCTCCCGATGCATTGCTCCCGCCTCATGCATCGGAGTCAGCCACC
DNA Sequence for Gene
>F571_RS0125805
ATGGCAGAAAGTACTCAGCACAAGCTAGACAGGGTTCGCCCACCCCGGGTGCAAATCACCTACGACGTCGAAATCGGCAACGCGATCGAGAAGAAAGAAT TGCCATTGGTTGTCGGTATTCTTGCCGACCTCTCCGGCAAGCCTCTCGAACCACTCCCGAAATTGAATGAACGGCGTTTCACCGAAATCGACCGCGACAA CTTCAATGAAGTCCTCTCCTCGATCGGCCCGCGCGCCACCTTGCAGGTCAACAACACCCTCAGCGGCGACGACAGCAAGCTCAACATCGAGCTCAACTTC AAACACATCGATGACTTCGACCCGGTCAAGGTGGTCGAGCAAGTCACGCCGCTGCGGCGTCTGTTCGAAGCTCGCCAGCGTCTGCGCGACCTGCTGACCA AACTCGACGGCAACGATGATCTGGACAAGCTGTTGCGTGACGTCATTGCCAACACCGAGGGACTGCAAGAGATCAAGTCGGCTCGTCCGGACACCGCCGC TCCCGCTCCTGCTGGCGACAGCGAAGCACCGGCTGAACCGCAAGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGCTCATCCACCCAGGGAGAATTTTGCCATGCCCGCCTCATCCGCCGCCCAGACCCAAGCCAGTGACAGTGCAAGCGAGACCTTGTCCTTGCTCGATGA AATAATCGCCAAAGGCCGCATGGCCCATGACGACAGCCAACAGGATTACGCCCGCGACATGCTCGCGGAATTCGCCACCCAGGTCCTCGATGAAGGCATG GCCGTCGACAAGGACACCGTGGCGATGATCAACGACCGCATCAGCCAGATCGACGAGCTGATCAGCGCTCAACTGAACGAAGTGCTGCACCACCCGGACC TGCAGAAACTTGAAGCCTCCTGGCGCGGCTTGCACTTGCTGGTAAAGAACACCGAGACCAGTTCCCGGCTGAAATTGCGCCTGCTCAACGTGACCCAGAA AGAGCTGCAGAACGACCTGGAAAAAGCCGTCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGATCTACGAAGAGGAATACGGCACCTTCGGCGGCCACCCG
Amino Acid Sequence
>type VI secretion protein
MAESTQHKLDRVRPPRVQITYDVEIGNAIEKKELPLVVGILADLSGKPLEPLPKLNERRFTEIDRDNFNEVLSSIGPRATLQVNNTLSGDDSKLNIELNF KHIDDFDPVKVVEQVTPLRRLFEARQRLRDLLTKLDGNDDLDKLLRDVIANTEGLQEIKSARPDTAAPAPAGDSEAPAEPQA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site