Pseudomonas sp. CF150, CF150_25419
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF150 soap_scaffs_150.Contig79, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGGCCATGGCTGAAGGAGGTGGTGACCGTGTTTATGGTCGAATGATGCAAGAGAACCAGAAGGCGATGGAGCAGTACGCCTTAGAAAACGGAAAGGCG ACACCTGAAGTTGTTCATTATGAATACGGAATGAACCTCGATGTCCAGAAGGTAATCAGTACCACTCAAGCCAATAAAACCTGTGGCGTAGCCCCTTCGC GCATGACCTATGAAGATTCGGCGGGCAAGCTCAACACCTTGGAATACAAGGTTATGGGTACTAACTGCCCTCACGGAAGTTAATTAGCGTTAGCCCTGAC TGCGCAAGGTTGTTCGGTATGTTTTGAGCCTGCTTGCTGTTCGCTGACACAGAAGTAATTTTCAGGTCACGCTGGAGTTATCTATTGTATGAAATTATGT CTGCCGGCACGTAGGAGAAATCCTCACGTGCTGGTGGCTTTTATAATTATAAAAAATATTTCATAAAGAAACTCTGCCAAGCTAAAGCCTGGAGTGTTAA
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| DNA Sequence for Gene |
>CF150_25419
ATGAACAATAAAAGCATTTATGGTCTTTCTCTCATTTCCCTTGGCATGAGCATGGGGCAAGTTGCAGTAGCTGTGGAGCAAAAGCCTGAAGGGTTCATTG AGGGGAGCACCTTTAGTATTCTCAATCGGAATCTCTATCTCAATCGTGATTATCGAAAGGGTCAATCAAGCCCCACGGGCAATGGTTACTCAGCCGAATG GGCTCATGGCATCATTGGCCGATTCGAATCAGGCTTTACTCAAGGTACCGTAGGCTTCGGCATTGATGCGTTTGCAATGGAAGGCCTCAAGCTCGATTCA GGTGATGGTCGCTCGGGAGCCCGTAGCTCAGTCGATGTCTTGCCGCACAATAGCAAAGGCCAACCTGAAGACTCCTACTCAAAAGTAGGCGGGGCCGCAA AAGTGCGTTTCCTGGATACAGTCGTCAAGGTAGGCGACGTATTTCCATCGACGCCTGTCGTTGCCTATGGGGATTCCCGACTTCTCCCGGAGAGTTTCCG GGGTGCAACGTTCACTAATACCAGCATCAAAGGCCTGACCCTTCAGGGGGGCCGGCTGCATGCGATGAGCCAACCCAATTCCAGTAGCATGCGTGACGGC TTTTCAACTTTTTACGCCGGTGTAGTAGATGCTCCATGGATCGCTTATCTAGGGGGCGATTACACGGTCAATGAACACGTAGGTGTGAGTCTTTACACCA GCCAATTCAAGGATGTGTGGAACCAATACTACGCGGGCACCACATTGAGCTATCCACTCTCAGAAAGCGTATCGCTAATTGGCGGCTTTAATTACTACCG AGCGGTTGATGAGGGTGAAAAACTTCTGGGAAGCTTCGATAACAAGATCTGGAGCGGCAAGACCGGGGTCAAATTCGGAGCGCACGCCGTGACCGTTGGT TACCAGCGCAATAATGGTAACGACGACTTTGACTACCTTCGCCAGTCCGACTCAATTTTTTTGGATAACTCCATTCAGTACAGCGATTTCAACTCACCGA AAGAGCAATCCTTGCAGCTGCGCTACGATCTAGATATGCAGGCTTTCGGCATCCCCGGTCTGAGCTTCATGACCCGCTACGCTAAGGGTTGGGATGCGGA CTATTCCAACGCAAACAGCGTGTACATGCGTCGCGGAGCGGACGGTGCCCCATTGCAGGACCAAAAGCGTTGGGAGCGAGACATCGAGGCTAAGTATGTC ATCCAGTCAGGCTCACTGAAGGACATGTCTTTACGTGTCCGCCAAGCAACGACACGAGCTACCGATTTCGAATCTGATTTGGACGAGGTCAGACTGATTG TTGAATATCCACTGCAACTCCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGCATTAGCCATCGGCATCAACTGTCCGGTATCCCCGATACACCCCGTCTCCTTGTTTCTCCTTTGGTTTGGAGACGGCTTAGGCGCCCTAGTGGCGC CTTTTTTTGTGGATTGAAGAAACTGTTGGTATATCCATCCCGGCGGCGAGCGTCCCTGGGGTTGTATGGCTGATTGGAACGTGTGAACATACTCTCAATA TAGGTAGGGGGGGTATGGTATGGGTCATATGAGATCAAGCAAAGACAATCTTCTTAAGCGTGTAAAGCGAATCGCTGGGCAAGTCCAGGCGATTGAGCGA GCACTCGACTCTGATGATGACTGCTCGAAAACCCTGCTTTTGGTCGCTTCTGCCCGTGGCGCTATCAATGGGCTGATGGATGAAATTATCGAAGACCACG CTCGTGAACACGTTGCGAATCCGACACTCAGCAACGAAGAAAGAGCGAAAGGCGTCGATGAGCTTCTCGAAGCCATTCGCCGCTATTCCAAATAGGATTT
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| Amino Acid Sequence |
>porin
MNNKSIYGLSLISLGMSMGQVAVAVEQKPEGFIEGSTFSILNRNLYLNRDYRKGQSSPTGNGYSAEWAHGIIGRFESGFTQGTVGFGIDAFAMEGLKLDS GDGRSGARSSVDVLPHNSKGQPEDSYSKVGGAAKVRFLDTVVKVGDVFPSTPVVAYGDSRLLPESFRGATFTNTSIKGLTLQGGRLHAMSQPNSSSMRDG FSTFYAGVVDAPWIAYLGGDYTVNEHVGVSLYTSQFKDVWNQYYAGTTLSYPLSESVSLIGGFNYYRAVDEGEKLLGSFDNKIWSGKTGVKFGAHAVTVG YQRNNGNDDFDYLRQSDSIFLDNSIQYSDFNSPKEQSLQLRYDLDMQAFGIPGLSFMTRYAKGWDADYSNANSVYMRRGADGAPLQDQKRWERDIEAKYV IQSGSLKDMSLRVRQATTRATDFESDLDEVRLIVEYPLQLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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