Pseudomonas sp. CFT9, CFT9_22975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig58, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTACTGTGGGTGCTGCTGATTTACTTCGGCACCGTCAATCTGATGCGTGCCCTGGGTGAGTTCTTCGGCAACCCAGACTTGTCCCTGAGCGCCTTCGCCG CCGGCGTCATCGCCCTGGGCCTGTGCTTCGGCGCCTACGCAACGGAAGTGTTCCGCGGCGCGATCCTCGCCATTCCCAAGGGCCACCGCGAAGCCGGTGT GGCGTTGGGGCTGTCGAAGTTTCGGATTTTCACCCGGCTGATCATGCCGCAAATGTGGCGTATCGCCCTGCCGGGCCTGGGTAACCTGTTCATGATCCTG ATGAAAGACACCGCGCTGGTGTCGGTGATCGGCCTGGAAGAAATCATGCGCCACGCGCAGATCGGCGTGACCGTGACCAAGCAACCCTTCACCTTCTTCA TGGTCGCGGCGTTCATGTACCTGGGCCTGACCGTACTGGCGATGACCAGCATGCACTTCCTGGAAAAACGCGCCGCCCGCGGCTTTGCAAGGAGCACCCA
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| DNA Sequence for Gene |
>CFT9_22975
ATGAGCGGCGACTACAGCTGGCTATCGCACTTTGACCTGGGCCTGAACTGGGCCGTGATCATCAAGTGGCTGCCGAAGTTGGCCCAGGGCGCAACCTTGA CCCTGGAGCTGGTGGCAATCGCCGTGATCGCCGGCCTGCTGCTGGCGATCCCTCTGGGCATCGCCCGCTCTTCGCGCCGCTGGTACGTGAGCGCCCTGCC CTACGGCTACATTTTCTTCTTTCGTGGCACGCCGCTGCTGGTGCAGTTGTTCCTGGTGTATTACGGCCTGGCGCAGTTCGACGCCGTGCGCAACAGCTTT ATGTGGCCGTACCTGCGCGACCCGTTCTGGTGCGCCACCGCCACTATGACCCTGCACACCGCCGCCTATATCGCCGAGATCCTGCGCGGTGCGATCCAGG CCATCCCGCCGGGAGAAATCGAAGCGGCACGGGCCCTGGGCATGTCCAAGCCCAAGACGCTGTTCTACATCATTCTGCCTCGCGCCTCGCGCATCGGCCT GCCGGCCTACAGCAATGAAATGATCCTGATGCTGCACGCCACGTCACTGGCGTTTACCGCCACCGTCGCCGACATCCTCAAGGTCGCCCGCGATGCGAAT GCCGAGACGTTCCTGACCTTCCAGGCCTTCGGCATCGCCGCGCTGCTCTACATGCTGCTGTCCTTTGCACTGGTGGGCCTGTTCAGGCTGGCCGAACGTC GCTGGATGCGCTTTCTTGTTCCTACCCGAGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCATGAATCAGTCCGCGCAGGCCCTGGCCGCTTATCCAATGGATGTACCCGTCGGCAAAACCGCCACGGCGGCCATCAAGCTGCAAGTCGAAGGTATCC ATAAACGCTACGGCGAACACGAAGTGCTCAAGGGCGTGTCCCTCAATGCACGCCAGGGCGATGTGATCAGCCTGATCGGCGCCAGCGGCTCGGGCAAAAG CACGATGCTGCGGTGCATCAACTTTCTGGAACAGCCTGACGCCGGGGTGATCACCCTGGACGGCATCAGCATTGAAATGCAACCAGGCCGCGCCGGCACC CGTGCGCCGCACCAGGCGCAACTGCAAAACCTGCGCACGCGCCTGGCCATGGTGTTCCAGCACTTCAACCTGTGGAGCCACATGACCGTGCTGGAAAACA TCACCATGGCCCCGCGCCGGGTGCTGAACGTGAGCGCCGCCGAAGCCGAGAAGCGTGCGCGACTGTACCTGGACAAGGTCGGCCTGCCGAGCCGCGTGGC
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| Amino Acid Sequence |
>amino acid ABC transporter permease
MSGDYSWLSHFDLGLNWAVIIKWLPKLAQGATLTLELVAIAVIAGLLLAIPLGIARSSRRWYVSALPYGYIFFFRGTPLLVQLFLVYYGLAQFDAVRNSF MWPYLRDPFWCATATMTLHTAAYIAEILRGAIQAIPPGEIEAARALGMSKPKTLFYIILPRASRIGLPAYSNEMILMLHATSLAFTATVADILKVARDAN AETFLTFQAFGIAALLYMLLSFALVGLFRLAERRWMRFLVPTRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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