Pseudomonas sp. CFT9, CFT9_22575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig58, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGATCTTCAGCCTCGCCCGCGATGGCGAGCGTGACGCCGTGTTCAACGTGTATGAGTCCCTGCTGGTGGAGCCGCCCCCCGACGCGCCGATTACGGTGA GCCTGCTGGACAACCCGAGCATCAAGGCCGTGGGCAAAGTCCGCGAAGTCACGCCCGCCGTGGCCGCCAATACCGGCACCGTCCAAGTGAAGATCGCCCT GCAAAGCCTGCCCAAGGGTATGGAGCTGGGGTCGGTGGTGAGTGCCACCGCCAATGGCCCGGCCAAGGCGAGCATCGAGCTGCCTTGGTCGGCCCTGACC AAAGACCTCAGCGAGCCGGCCGTGTGGCTGGTGGACGGTGAAGGCAAGGTGCAGTTGCACAAGGTCACCGTGGCGCGCTACCTCACCGGCAAAGTGATCA TCGGCGAGGGTCTCAAAGGCGGTGAAAAAGTCGTGATAGCCGGTGGGCAATTGCTGCACCCCGGCATGGTCGTCGAGATCGCCCAACCCGGAGCGCAGCC
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| DNA Sequence for Gene |
>CFT9_22575
ATGAAGCAATTGACGCTGATTGTCGCCGCCAGCCTGTTGCTGATGGCCTGCTCCAAGGAAGAGGCGCCGCCCGAACCCTTACGCCCGGTGCTGTCCATGG AAGTGAGGGCCGAAGACCAGGAAAACCTGGGTCGTTTCGCCGGCACCATCCAGGCCCGCTATGAAAGCAACCTGGGTTTCCGTGTGCCCGGCCGCATCGC CCGTCGCGCCGTGGATGTCGGCGCCGAGGTGGAGAAGGGCGCCTTGCTCGCCGTGCTTGACCCCACCGACCAGCAGAACCAATTACGCGCTGCCCAGGGC GACCTGGCGCGCGTACAGGCGCAGTTCATCAACGCCCAGGCCAACGCTCGGCGGCAACAGGAACTGTTCAACCGTGGCGTCGGCGCCCAGGCTCAGCTGG ATGTGGCCCAGACCGACCTGAAAACCACCCAGGCGACCCTTGACCAGGCCCGTGCCTCGGTCAACCAGGCCAAGGACCAACTCAACTACGCCGAACTGCG CACCGACCATGCCGGCATCGTCACTGCCTGGAACGCTGAGGCCGGCCAAGTGGTCAGCGCCGGCCAGCAGGTGGTGACCCTGGCCCGTCCGGACATCAAG GAAGCGGTGATCGACCTGCCCGCCGGCCTGGCTGAACGCTTGCCTGCCGATGTGGTGTTCCTGGTCGCCGGGCAACTGGACCCCAGCGTGCACACCACCG CCGTGGTGCGTGAGATCGAGCCTCAGGCCCAAAGCGCCACGCGCACCCGTCGCGCACGCCTGAGCCTGGCCGAAACCCCGCCCGCGTTCCGCCTGGGCAC GGCAATCAGCGTGACGTTGAGCACCGCCATCGCCCCGCGTATCGAACTGCCCCTGAGCGCCTTGCAGGAAGTGGACGGCAAGACCCGTATCTGGCTGCTC GACACCCAGAGCCAGACCGTGCAACCCCGCGAGGTCACGGTTATCAGCCGTGATGCCCGCAGCGCCTTGCTCAATGGCAGCGTCAAACCCGGCGAGCGCA TTGTCACCGCCGGCGTGAACAGCCTGAAACCTGGGCAAAAAGTCAAAATCGACGAGGACAGCCCGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGAGCTTCAACTTATCCGACTGGGCCCTCAAGCATCAGTCCTTCGTCTGGTACCTGATGTTCGTCGCGCTGCTGATGGGCGTGTTCTCGTACATGAA CCTGGGCCGTGAAGAAGACCCGTCGTTCACCATCAAGACCATGGTGATCCAGACCCGCTGGCCGGGCGCGACCCAGGAAGAAACCCTCAAGCAGGTCACC GACCGTATTGAGAAAAAACTCGAGGAACTCGACTCTCTCGACTATGTGAAAAGCTACACCCGGCCCGGCGAGTCCACGGTGTTCGTGTTCCTCAAGGACA CCACCAGTGCCAAGGCCATCCCGGAGATCTGGTACCAGGTCCGCAAAAAGATCGATGACATTCGTGGGACCTTCCCCCAGGGCTTGCAGGGGCCATCGTT CAACGATGAGTTCGGTGACGTGTTCGGCTCGGTGTATGCCTTTACCGGCGATGGCCTGTCGATGCGCCAGTTGCGTGACTACGTGGAACAGGTGCGCGCC
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| Amino Acid Sequence |
>RND transporter
MKQLTLIVAASLLLMACSKEEAPPEPLRPVLSMEVRAEDQENLGRFAGTIQARYESNLGFRVPGRIARRAVDVGAEVEKGALLAVLDPTDQQNQLRAAQG DLARVQAQFINAQANARRQQELFNRGVGAQAQLDVAQTDLKTTQATLDQARASVNQAKDQLNYAELRTDHAGIVTAWNAEAGQVVSAGQQVVTLARPDIK EAVIDLPAGLAERLPADVVFLVAGQLDPSVHTTAVVREIEPQAQSATRTRRARLSLAETPPAFRLGTAISVTLSTAIAPRIELPLSALQEVDGKTRIWLL DTQSQTVQPREVTVISRDARSALLNGSVKPGERIVTAGVNSLKPGQKVKIDEDSPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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