Pseudomonas sp. CFT9, CFT9_17836
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFT9 soap_scaffs_T9.Contig48.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTCTTGCTGTTCTTGCGCCAGGACAATGCCAATGCCGAGCAGTCGGCGCAGGTGGTCATCCCAGCGATTCGCCTGCTCAGCGTCGGCGACCAGTTGGGC TTGGCCAACGACGGCACCCCGGCCGTACCGCCACCCGGCACCGCCGAAGAACGCGCCCAGGCTGCCCAACGCCGCACTGCCGCGCGCAGTGTGGTGCTGG CGGTGCCCGAACCCTTGCTGAGCCGGCTGATGCTCGCCTCCCAAGCCGGCACGCTGCGCCTGGCCGTGCGCAGTGCCGACGAACAATTGCTCAGCCGCTA CTGGGCCGGCGAAAGCGACACCCCGGACAAGGTGCAAAGCGCCAACCGCGATCTCTACCAATTCACCCAATTGGCCCTCAGCGGCCCGCCAAAAAAAATC ACCCCCGCGGTGGCCGACACCGGCCAGCGTCGGGGCGTCGAAGTGATTCGCGGCGCGGCGGCGGCACAACCTACCCCCTGATTGAACAAGGATGCCTTGA
|
|
| DNA Sequence for Gene |
>CFT9_17836
ATGAGCCAACGCTACGCTCAATTGGCCTTGGCCTTGATGCTGCCGTGCCTGCCCCTGGGCATGGCGATGGGCGCATCGGGCAACTGCAACACCCTCGGCC AACTGCCCGCTGTGATCGAGGTGGGCGAAGGCTTGCAGACCGAGCTGCAATCGCCGGTAGCGATTACGCGCCTGGCCATCGGCGATCCGAAAATCGCCGA CGTGCGGGTCAACGGCGACCGCCACTTTCTGCTCACCGGTGTCGGCAGCGGTGCCACCAGCCTGATGGTGTGGACCGGCTGCTCGACCACGCCGCGTCAG AGCATGGTGTTCGTTAAAGGCAAGGCCACCTCGGCGCTGACCAGCCAATCGCTGTCGCCCTCCGAAGACCCGACGCTGCCCAGCCAGGTGCAGACCGATA TTCGCTTCGTCGAGGTCAGCCGCACCAAGCTCAAGGAAGCCAGCACCAAGATCCTGGGCATGGGCAACAATTTCTTCCTCGGCAGCCCAAGCTTGCTGTC CCCTTCAGAGGGCATCTTCAAATTGCCGGTGAGCGCTGACAGCTTCAACATCGGTTTTGGCGGTGGCCGGGTCAAGGCGCTGATCAACGCCCTGGAAAGC AGTGGCTTCGCCTACACCCTCGCACGCCCGAGCCTGGTGGCCATGAGCGGCCAGAGCGCAACCTTCCTGGCCGGCGGCGAAGTGCCGATTCCGGTGCCCA GTGCCGGCAGCGATACCATCACCATCGAGTACAAGGAATTCGGCATTCGCCTGACCCTCACGCCCACGGTCATCGACCACAACCGCATCGCCTTGAAAGT CGCCCCGGAAGTCAGCGAGCTGGATTACAACAACGCGATCCGGATTGAGGGCATCCAGGTGCCTGCCCTGACCGTCCGACGCACCGACACCAGTGTGTCA CTGGCCGATGGCGAAAGCTTTGTGATCAGCGGCCTGATCAGCAGCACCAACCGCTCCACCATCGCCAAGCTCCCGGGCCTGGGCGATATCCCGATCCTTG GTGCGTTTTTCCGCGACTCCAATATCAACAGCGAAGAAAAAGAACTGCTGATGATTGTCACGCCGCATCTGGTCCAGCCACTGGCTGCCAATGCGCAGTT GCCGTCGCTGCCCGGCGAAAAACTGCGCACCTATGACCCGAATTGGTTCCGGCTGTTCTTCCTGGAAAACGGCAACTTCGACCGTCGCAGCGGACTTTCC CAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGATAGCCTGAGCCAGACCTTCCTGGCAATCACCCGCAACAGCACCGACCTGGAATGGCTCCAAGGCGCACTGGCGCCCCTTGGCCAAGTGATCAGCGT GGGCGGCGGCAGCCTCGATGAATTGCTGGCACTGGTGGACGTGACCTTCGCCAACCTGGTGTTCGTGGGCCTGGACCGTGAACACCTAGTGGCTCAGAGC GCCTTGATCGAAGGCGCCCTGGAAGCCAAGCCGATGTTGGCGGTGGTGGCCTTGGGCGACGGCATGGACAACCAGTTGGTGCTCAACGCCATGCGTGCCG GTGCGCGGGATTTTGTCGCCTATGGCTCGCGCTCCAGCGAAGTGGCCGGGCTGGTGCGGCGCCTGAGCAAGCGCTTGCCGCCCACCGCGCCGAACGCCCA CCTCGGTGGCCTCACCGTGCTCTACGGTGCCCAGGGCAACACCGATGGCGCCTTGCTGGCAAGCCACTTGGCGATGGTGGTGCAAAAAAGCGGCCAGCAG
|
|
| Amino Acid Sequence |
>secretin
MSQRYAQLALALMLPCLPLGMAMGASGNCNTLGQLPAVIEVGEGLQTELQSPVAITRLAIGDPKIADVRVNGDRHFLLTGVGSGATSLMVWTGCSTTPRQ SMVFVKGKATSALTSQSLSPSEDPTLPSQVQTDIRFVEVSRTKLKEASTKILGMGNNFFLGSPSLLSPSEGIFKLPVSADSFNIGFGGGRVKALINALES SGFAYTLARPSLVAMSGQSATFLAGGEVPIPVPSAGSDTITIEYKEFGIRLTLTPTVIDHNRIALKVAPEVSELDYNNAIRIEGIQVPALTVRRTDTSVS LADGESFVISGLISSTNRSTIAKLPGLGDIPILGAFFRDSNINSEEKELLMIVTPHLVQPLAANAQLPSLPGEKLRTYDPNWFRLFFLENGNFDRRSGLS Q
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|