Pseudomonas sp. CFT9, CFT9_12816

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CFT9 soap_scaffs_T9.Contig40, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTATTGCTTGGAAAATTCCAGCAACAAGCCATCGAAAAAGGTTTCACCCAACGACACCGGGACAGTCATACGTACAGGGCCGGCCAAATCATCTTTGAG CCGCGCCAAGGCCTGGCGCGCGCGTTCCACCTGCACCACCAATGCTTGTGCCTGGGGCAGCAACGCCGCGCCGGCAGCAGTAAGGCTCAGCTTGCGCGTA GTGCGGTGCAGCAAAACCACGGCAAACTGCGCTTCCAACTGGCTGATGCGCTTGGACAACTGCCCTTTGCTGCAGCCCAATTGTGCGGCCGCCACAGTGA AACTGCCGGCTTCGATCAGCACGGCGAACGCCGCCAAGTCATCCATTTCGCTCATGGACTGTTTCCATTTGAAAACCAAAGGTTGCCTATTAGCGCGTTT ATCCAGCTAAAAAGCCACACTAGACTGAATGCAAATCCCAACCCCTGCAGGAGCGAGCAAGCTCGCTCCTGCAGGGAGTCAGCCCCAGAGGAACAGCACG
DNA Sequence for Gene
>CFT9_12816
ATGAAAATCCTATTGATTGGTGCCAGCGGCACCATCGGTTCAGCAGTCAAGGCAGAGTTGGCCCAGCGCCACGAAGTGATCAGCATCGGCCGCACCAGCG GTGACTTCCAAGTGGATATCAGCGATAGCAACTCGATCCGTAAGCTGTTCGAGCAGACCGGCAAGTTCGACGCGCTGATCTGCGCGGCAGGCAGCGTCAA CTTCGTGCCCCTGGCAGACATGAACGACAGCGATTTCGAACTGGGCCTGCGTGACAAACTGATGGGCCAGGTCAACCTGCTGTTGATCGGCCGTGAACAC GCCAACGACGGTGCTTCGTTCACGTTCACCAGCGGCATTCTGAACCGTGACCCGATCCGCACCGGTGCTTCGGCGGCCTTGGTCAACGGTGCATTGGACG CCTTCGTCAAAGCGGCGGCCATCGAGTTGCCACGCGGCCTGCGCATCAACTCGGTCAGCCCGACGGTGTTGCTGGAAGCCATGGGCAGCTATGCTCCCTA TTTCCGTGGCTACAAACCTGCCCCGGCCGCCGATGTGGCACTGGCTTACGCCAAAAGCGTCGAGGGCCTGCAAACCGGTCAGACCTTTATCGTAGGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGGTGAGATCCGTAAGAAACGCCTGAAGCTGGCAAGCGGGCTTGTGATGCACGGCCAGCCTGCGTAACGTGGCGGCAATTGCCTGGAGACCCGATAATGC GCGCCGCCCGTACCCTCGCCCTGTTTGCCTTGCTTCCTGTGTTCGCCGCCTGCCAATTGTTCGAAAGCGAGCCGGCCAAGCCATCGACTGTCGGGCTGAC CCGTATGCAGGGTGAGTTGACGGCGGTGGACGGCAAACTGCTGTTCCAGCCCTGTGGCGACCAGCGTAGCTACGTGGTCAACGATACCGGCGGCACCAGC GTCCTGCAGGAAGCCGCCTCGCTGGCTGGCCAGCAGGGCATACTGTTTGCCGACCTGCGTGGCAAGTTTTCCGGGGTCGCCAGCGGCACCCAGGGTTCAG TGGACCTGCAACAGCTGTATCGCGTCGAACGCTCGACCTCAGCGTGCTCTGACCCGGATTTCAAGCGCATGATCCTGCGGGCCAACGGCCATAAACCCGC
Amino Acid Sequence
>short chain dehydrogenase
MKILLIGASGTIGSAVKAELAQRHEVISIGRTSGDFQVDISDSNSIRKLFEQTGKFDALICAAGSVNFVPLADMNDSDFELGLRDKLMGQVNLLLIGREH ANDGASFTFTSGILNRDPIRTGASAALVNGALDAFVKAAAIELPRGLRINSVSPTVLLEAMGSYAPYFRGYKPAPAADVALAYAKSVEGLQTGQTFIVG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site