Pseudomonas sp. CFII64, CFII64_25755
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig53, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAAGGCAATTTCTTCGAGCCGACCATTCTGGTCAACGTGTCGAAAGATGCCGCCGTCGCCAAAGAAGAAACCTTTGGCCCGTTGGCGCCGCTGTTCCGC TTCAAAGACGAAGCCGAAGTGATTGCGATGGCCAATGACACCGAGTTCGGTCTGGCGTCGTACTTCTACGCGCGCGACATGAGCCGCGTGTTCCGTGTTG CTGAAGCGCTGGAATACGGCATGGTGGGTATCAACACCGGCCTGATCTCCAACGAAGTCGCGCCGTTTGGCGGGATCAAGTCGTCGGGCCTGGGCCGCGA AGGTTCCAAGTACGGCATCGAAGATTATCTGGAAATCAAATACTTGTGCCTGAGCGTTTAACGCCCGCGCACTCGCTTCAAGCGTAATTCCAACCCGGTA GCCGGAAGTTGCAGCAGTCGATCATCGTATGCTGCTGCAACTCACCCCGACTGCTTAATCCTTGACCAACGCCGACCGATGAGCGGCGAATGAGGAAACC
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| DNA Sequence for Gene |
>CFII64_25755
ATGAGTCAAACAAACGCAGAATTGATGAAACGCCGCGAGGCCGCTGTTCCACGCGGTGTTGGCCAGATCCACCCGATCTTCGCCGCTTCGGCCAAGAACG CTACTGTGACGGACGTTGAAGGTCGTGAATTCATCGACTTCGCGGGCGGCATCGCGGTGCTGAACACCGGTCACCTGCACCCGAAAATCATTGCCGCCGT GCAAGAGCAGCTGACCAAGCTGACTCACACCTGCTTCCAGGTTCTGGCTTACGAGCCGTACGTTGAGCTGTGCGAAAAGATCAACGCCAAGGTTCCAGGT GATTTCGAGAAGAAAACCCTGTTGGTGACCACAGGCTCCGAAGCGGTTGAAAATGCCGTGAAGATCGCCCGTGCCGCCACTGGCCGTACCGGCGTGATCG CGTTCACTGGCGCTTACCATGGCCGCACCATGATGACCCTGGGCCTGACCGGCAAAGTCGTGCCTTACTCGGCCGGTATGGGCCTGATGCCAGGCGGTAT CTTCCGCGCAATCTATCCATGTGAACTGCATGGCGTGAGCGTCGACGATTCCATCGCCAGCATCGAGCGCATCTTCAAGAACGACGCCGAGCCGCGCGAC ATCGCTGCAATCATCATCGAGCCGGTGCAGGGCGAAGGTGGTTTCTATGTGGCGCCGAAGGCGTTCATGGCTCGCCTGCGCGAACTGTGCGACAAGCATG GCATCCTGCTGATCGCTGACGAAGTGCAGACCGGCGCCGGTCGTACCGGTACGTTCTTCGCCATGGAACAGATGGGCGTCAGCGCTGACCTGACCACTTT CGCCAAATCCATCGCTGGCGGTTTCCCGTTGGCCGGTGTGTGCGGCAAGGCTGAGTACATGGACGCGATCGCTCCGGGCGGCCTGGGCGGCACCTACGCC GGTAGCCCGGTGGCGTGCGCGGCTGCGCTAGCGGTATTGCAAGTGTTTGAAGAAGAACACTTGCTGGATCGCTGCAAGGCAGTCGGTGAGCGTCTGGTGA CGGGTCTCAAGGCGATTCAGGCTAAGTACCCGGTGATCGGCGAAGTCCGGGCGCTGGGCGCGATGATCGCGCTGGAGCTGTTTGAAAACGGCGACACCCA CAAGCCGAACGCGGCTGCAGTGGCGCAGGTTGTGGCCAAGGCGCGCGACAAGGGTCTGATCCTGCTGTCTTGCGGCACCTACGGCAACGTTTTGCGCGTC CTGGTGCCGCTGACTTCGCCGGACGAGCAACTGGATAAAGGCTTGGCACTGCTCGAAGAGTGCTTTGCCGAGCTGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAATGCCAGGGCCGCATTGATTAAAATGTGACCAAATGGACAAAAAAGACCCGCTTCGGCGGGTTTTTTTGCGTTTTAAGGGGGCATATAGCGCTTTTGA GGTATATCTCCAAACGGATGCATTGGCTAAGGTAAACGCATGGATGTCGGAGACTGCTGATGACTGCTGTAGATTTACCCGCGGTACCTCGCGTATTGAT TGCAGAATCCGATCCATGGGTTCGCGAAACGCTGAGTGAGTTGCTTCTGAGCGTGCGCGCTGATATCGATCTTGAGATCTGCACCGACGGCAAGCAGGCC GCCGAATGGATGAAAAAGCAGCTGCCTGATCTGGTCATTGCTGCCAGAGAACTTCCTGTCATTGACGGTTTGAGCCTGTTGCGCGGTATTCGCGGGTTGC AGCGCAAGCCAGTCATTCCTTTTATCCTGATCAGTAATCGCAGTGACAGCGCCAGTGTCCGTGAGGCAGTGCCGCTGGCGCCGACCGCTTACCTGACCAA
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSQTNAELMKRREAAVPRGVGQIHPIFAASAKNATVTDVEGREFIDFAGGIAVLNTGHLHPKIIAAVQEQLTKLTHTCFQVLAYEPYVELCEKINAKVPG DFEKKTLLVTTGSEAVENAVKIARAATGRTGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRAIYPCELHGVSVDDSIASIERIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKAFMARLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVSADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPVACAAALAVLQVFEEEHLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIALELFENGDTHKPNAAAVAQVVAKARDKGLILLSCGTYGNVLRV LVPLTSPDEQLDKGLALLEECFAELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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