Pseudomonas sp. CFII64, CFII64_06815
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CFII64 soap_scaffs_II64_half.Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGCATTCTCTATGAAAGCTATATCCACCCGTTGACGATTCTCTCCACGCTGCCGTCGGCAGGTGTTGGCGCGTTGCTCAGTATCTATGTGC TGGGCGGGCAGTTCAGTCTGATTTCCCTGCTCGGGTTGTTTCTGCTGATCGGCGTGGTGAAGAAAAATGCAATTCTGATGATCGACCTGGCACTGCAACT GGAGCGTCACGGCGGGATGACGCCGCTGGAGTCGATCCGCAGTGCCTGCCTGCAGCGTCTGCGGCCGATTCTGATGACGACGCTGGCGGCCATTCTCGGT GCGCTGCCATTATTGCTGAGCAGTGCTGAAGGTGCGGAAATGCGCCGGCCGCTGGGTTTGACGATTATTGGCGGGCTGGTCGTGAGCCAGATCCTGACCC TTTACACCACCCCGGTGGTTTACCTCTATCTCGACCGTCTGCGCCACCGCTTCAACAAGTGGCGTGGCGTGCGTACCGATGCTGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>CFII64_06815
ATGACCGAACGCCCGAAAATCAAAGCCGTCAAACAATGGCCCGCGCGCAATGCCGCGCGTGGTTTGGGTCTGGGGCTGTGTGTTCTGCTCTTGAGCGCCT GCGCGGTCGGCCCGGATTACCACAAGCCGGAAATGGCGGCTCCGGCGCAGTTCAAGGCGGCGCAGGGCTGGCGTCAGGCCGCGCCGAGTGATTCGCTGGC CCGTGGCGCCTGGTGGGAGTTGTATGGCGACGCGCAGCTCAACGGGCTGGTGGAAAAACTCAACAGTTCCAACCAGACGGTCGCCCAGTACGAAGCGCAA TACCGCCAGGCCAGGGCGTTGGTCCGCAGCTCCCGGGGCGCGTTCTTTCCGACCCTTGACCTGACGACTAGCAAAAACCGCTCCAGCCAGGGCACCGGCA GCAGCAGTTCGAGCCTGAGCAGTTCCAGCAGCGGCATTCGCGATACCTACAATGCGCAGCTGGGCGTCAGTTGGGAAGCCGACATCTGGGGCAAGCTGCG TCGCGGCCTGGAAGCCGACACCGCCAGCGCCCAGGCGAGCCTTGGCGATCTGGCGGCCATGCAACTGAGCCTGCAATCGGAGCTGGTGCAGAACTACCTG CAATTGCGCGTCATCGACGAGCAAAAGCGTCTGCTTGAAGCCACGGTCGATGCGTATCAGCGTTCCCTGACCTTGACTCAAAACCAATACCGCGCCGGTA TTTCCGGACGCGATGCAGTGGCGCAGGCGCAAACCCAGCTGAAAAGCACGCAAGCCGATTTGATCGATCTGATGTGGCAGCGCGCCCAATTCGAAAACGC CATCGCCGTGCTGATGGGCCAGGCGCCAGCGGACTTTAATCTGGCGGCGAGCACCTCGATTCCGACGCTGCCCGCGATTCCCGTCGGCTTGCCTTCACAG TTGCTTGAGCGGCGGCCAGACATCGCAGCGGCCGAGCGTTCGGTCATGGCGGCCAATGCCAATATCGGCATCGCCAAGGCGGCCTATTATCCAGACCTGA CCCTGAGCCTGAGCGGCGGCTACAGCAGCAGCACCTTCGCCAACTGGATCAGCCTGCCGAACCGTTTCTGGTCAGTCGGACCGCAATTAGCCATGACGCT GTTCGACGGCGGGCAACGTTCGGCTGAAGTCGATCGCACCGAAGCTGTCTACGACCAGACCGTGGCGCAGTATCGGCAAACGGTGCTGAACGGGTTCCAG GAAGTGGAAAACTACCTGGTGCAGCTCAAGGTCTACGAGGAAGAGGCGGGCGTGCGCGCCGAAGCGCTGGCTGCGGCCCGTGATTCGTTACGCCTGACCA GCAATCAATACAAGGCGGGTCTGATCGGTTATCTGGACGTGGTCAATGTGCAGACCACCGCACTGAGCAACGAACGCAGCGTGTTGACCTTGCTGCAAAG TCGCCTGATTGCCAGCGTCCAGTTGATCGCGGCACTGGGAGGCGGCTGGGAATCCGACAGCGGTCTGAAACTGCAGGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGTCACTGGCGTCAAATCTGCCGCGTAGCTCGCTGCGTTAGACCTTGCAGTACGGGGCTTTGCGGGTTTTTCGGCCAAACTCCGGTGGATGCGAATTA ATTAATGGCTATGCGCCACATTTGCGACGACCGACCGCGACATTTGGCGGAAAATGCGTAGAATCCCCCGGCTCTGACAGGGCATGGATTGGCTCGTTGT TCCACGCCGCGAGCCGCTCATGTTGATTGGTCAATACACCCCTTCGCTAGTTCTGGTTTCCATCTTTGTCGCCATCCTTGCGTCCTACACGGCGCTGGAT CTCGCCGGGCGCATCGCGACGTCCCACGGCCGTGCGTTGCTGGCGTGGATCGGCGGTGGCGCGTTTTCCATGGGGATCGGCATCTGGGCCATGCATTTCA TTGGCATGCTGGCCTTTCATCTGCCCGTTGAACTGGCATTCGATCTGCCGATCACCCTGCTTTCGATGCTGATCGCTATCGTATCCTCCGGTTTTGCCCT
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| Amino Acid Sequence |
>RND efflux system, outer membrane lipoprotein, NodT
MTERPKIKAVKQWPARNAARGLGLGLCVLLLSACAVGPDYHKPEMAAPAQFKAAQGWRQAAPSDSLARGAWWELYGDAQLNGLVEKLNSSNQTVAQYEAQ YRQARALVRSSRGAFFPTLDLTTSKNRSSQGTGSSSSSLSSSSSGIRDTYNAQLGVSWEADIWGKLRRGLEADTASAQASLGDLAAMQLSLQSELVQNYL QLRVIDEQKRLLEATVDAYQRSLTLTQNQYRAGISGRDAVAQAQTQLKSTQADLIDLMWQRAQFENAIAVLMGQAPADFNLAASTSIPTLPAIPVGLPSQ LLERRPDIAAAERSVMAANANIGIAKAAYYPDLTLSLSGGYSSSTFANWISLPNRFWSVGPQLAMTLFDGGQRSAEVDRTEAVYDQTVAQYRQTVLNGFQ EVENYLVQLKVYEEEAGVRAEALAAARDSLRLTSNQYKAGLIGYLDVVNVQTTALSNERSVLTLLQSRLIASVQLIAALGGGWESDSGLKLQD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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