Pseudomonas sp. CF149, CF149_11100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CF149 soap_scaffs_149.Contig16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGACTCAGTATCCTGTTTTAAATCCCAAGGCCTGCAGCTTGGCCGAGCAGGGGATGGATTGCCAGTCAGCGAGTGAAACAACGGGCTTGACCTTGCCA CGATGGCAAGGTCGAAGCTGTAGCCATCTCTCAGATAGGAGGCGTGATCATGCAAACGTTCAAAGTAGAAGGTATGACCTGTGGTGGCTGTGTTGGCGCG GTGACCCGTGCGGTGCAGGCTGTGGATAAAGATGCGAAGGTCGAAGTGGATCTGGCGAGCAAAACCGTAAAAGTGGACAGCAAGGTGGCTCCTCTGCAGA TTATCGATGTGATTACCAATGCAGGGTTTGAAGCGCGGACTGCGCACTAGAAAGCATCGCCCAATCGTGGGGGTGAGCCTGCTCACTCTCACAACGGAGT CTCTACAATTTATTAGCTAGCTGGCTATCTTAATGTTCAAGTTCAGTATCCACGGCTAGACTATCGGGCTGCGCTAATTGCAGCCCGATCTGGATACCTG
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| DNA Sequence for Gene |
>CF149_11100
ATGAACCTTCGAACAATCTTGATTCTTGGCGCCCTGAGCGCCTTCGGTCCGTTGGCGATCGATTTCTATCTGCCGGGCTTCCCAGCCATGGCACAAGCCT TTGCAACAGATGAGCAGCATATTCAGTTGACCCTGGCGGTTTACTTCCTGGGCCTTTCTATCGGCCAGCTGGCTTATGGCCCGATTGCGGATCGTTTTGG CCGCCGCATTCCATTATTGGTAGGGGTTGGCCTGTTTACGGCGGCATCGCTGGCCTGTGCATTTGCCCCGACCCTGGAATGGCTGATCGGCGCCCGGTTC GTTCAGGCGCTGGGCGGTTGCGCGGGGATGGTGCTGTCGCGGGCGATTGTCAGCGACAAGTGCGATGCGGTGGGGTCGGCCAAGGTCTTTTCGCAATTGA TGCTGGTGATGGGGCTGGCTCCGATTCTGGCGCCGATGCTCGGTGGTCTGTTGGTCAACCTGCATGGCTGGCAATCGATCTTTATCGTGCTGACCGGGTT CAGTGCCTTGGCCGCTCTGGCCGTTGCGCTGGGGTTGCCGGAAAGTCTGCCGGCCAATGTGCCGCGTCAACCTCTGTCGGGAGCACTGCGCCAATACGGG CGATTGCTCAAGGACGGTGAGTTTCTGGGGCATGCACTCACAGGGGGGATCGCAATGGCCGGGATGTTTGCCTACATAGCCGGCTCACCTTTCGTATTTA TCAAACTGTACGGCGTACCTGCCGAACATTACGGCTGGCTGTTTGGCAGTAACGCGGCGGGCTTTATTCTGGTAGCACAGGTCAACGCCCGGTTGTTGGC ATCGCGCGGCCCGGCTTTTTTGCTGGCGCGAACGGTGTGGGTCTATCTGGCTGCAGGTCTGGTGTTGCTTGGGGTCAGTGCGTTGCACACCGAGCAACTA TGGCCGCTGCTGATTCCGTTGTTTATCTGTATTGCCAGTCTGGGTTGCATCATTCCCAATGCTTCGGCCTGTGCCATGAGCGGGCAGGGCGCGCGTGCCG GTAGCGCGTCGGCAATGCTCGGCTGCTTGCAGTTCAGCGTGGCAGCGGCGGCGGCTTCATTGGTGGGTGTTCTGCACGATGGTAGCGCTATGCCAATGGC GTTGGTCATTACGCTGTGTGGGGTTTTAGCCGTGGCGATCGCGATGGCGACCCGGCGTTTGTACACCGCCCGGATCGCCGCTCAGCAGTCGATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAGCCTGCCAAACGTTCGGGCAGGCTATGCGGGGCTTGCAGGCGAGATTGCAATTTATCCACAAAGGCGCGGGCCTCGGACTCGCTGCGAAAATTGAC GGCTTGTTGGTCGATTTGAACCTGCCATTGGCAGTTACGGGATCTTGCTAACGCTCGTATCAGGATTTTCATGACTGGCCTCCTTCGGTTCGCAAAGGAG GCCAGTGTATGCCGAAATACGTGGGTAAATATGTCCGGGGTCAAGTCTCTGACTGACGGTTGAGCGTTGGCCGCATCAGTCCCGTGTCGCGTTTTATCAG AACCCTTCGAGCACAATTTTGCCCTTGGATTTGCCGCTTTCCAGCAGCGCATGGGCGCGGCGCAGGTTCGCCGCGTTGATGGTGCCGAAGTGCTCGCCGA CGGTGGTGCGCAGGGTGCCAGCATTAATCAGGTCAGCGACTCGATTAAGCAAGTGATGCTGCTCGATCATGTCCGCGGTTTCGAACAGTGAGCGGGTGTA
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| Amino Acid Sequence |
>Bcr/CflA family multidrug resistance transporter
MNLRTILILGALSAFGPLAIDFYLPGFPAMAQAFATDEQHIQLTLAVYFLGLSIGQLAYGPIADRFGRRIPLLVGVGLFTAASLACAFAPTLEWLIGARF VQALGGCAGMVLSRAIVSDKCDAVGSAKVFSQLMLVMGLAPILAPMLGGLLVNLHGWQSIFIVLTGFSALAALAVALGLPESLPANVPRQPLSGALRQYG RLLKDGEFLGHALTGGIAMAGMFAYIAGSPFVFIKLYGVPAEHYGWLFGSNAAGFILVAQVNARLLASRGPAFLLARTVWVYLAAGLVLLGVSALHTEQL WPLLIPLFICIASLGCIIPNASACAMSGQGARAGSASAMLGCLQFSVAAAAASLVGVLHDGSAMPMALVITLCGVLAVAIAMATRRLYTARIAAQQSI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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