Pseudomonas syringae BRIP39023, A988_18477

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae BRIP39023 genomic scaffold scaffold13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGCTGCCACTTTATCTATATTAGCCTTTGTCATGTTGGTATACTTATTTATCTACCTGACGCCGACAAAAAACTTTCCATTTGAAGTATCTGGCAATAAA GTTTCTTTCAGCGCCCCCGATATATCCAGCTTCCAGTCCGGCATTATTGCAGGCGCCGGGACACTCGTAGCGTCTGTAGTTATAAGGTCTGTCACCTCAC TGACAACAGGCATTCTTATAATCCTGCTTTTTTTATTCGGTTGCATCTTTATACTTATCCATTCCCGTCATCTTATTAGAGGCCTGCGCACCCTACGCAT CCAAGAAAAGACCATGCCCGCCCCCTACACCTTTATGCAAATCGATGATATTCGCGAAGCTCGCAGTCGTTGGTGGCTAAGCAGGTTGTTCAGATGGGTC GCTTCCCTACGCGAATCGTCGGGTGCGTGATGTTTGATAATGATATGAGCAGGCTGCCCCAGCCTAACGACGTGCTATCGGTTAAGGAGTAATTGGAGCG
DNA Sequence for Gene
>A988_18477
ATGGATCTATCCTCACTGTTTACGGCGCAGAACAGACGACTGTTCAAGCTGACGATGGCCCTCAAGGGTGGCCAGGAGCTGTTGCTTGATTCCTTCGCCG GTAGTGAAGGTTTATCGGCTGATTTCGGGTTTCAACTCGATCTGATTTCTGATGACGCGAGCGTAAAGCTAAAGTCCGCTATAGGGCAGTCCGCGACCAT TGAAATCGAACTCGCCACCGGAGGCAGCCGTTACATTAACGGTCATGTATTGAGCTTCGGTAACAATGGCAGCGACGGTGGCATGTCGCGCTATTCAGCC TATATAGGCTCGTGGTTGAGCCTGATTGCGCAGAGGTACGATTCTCAGATCTATCAGGATCAGACAGTGGAGCAGGTGATCCGGAAGGTATTGGGTCGCT ACGATGGGCTTGCGAAGTACGAGTTCCGTGTCAATCGCACGCTCAAGCCATACAGCTACATCACCCAATACCGCGAAAGCGATAGTCACTTCGTCATGCG CCTGCTGGAGCAGGAGGGTTTGTTCTTCTACTTTGAGCATACGGCGGACAGCCATACGCTGATCATCATGGACGACTCGACTGTACTCACACCGCTTCCA GAGCAGCCTCAGGTTCGCTTCCATACAGCTTCTGTAACCGAAACCTCTGACTCCATCACCCACTGGAGTTCAGCCCGGGAATTCCAGGCTGGCAAGATTT CGGTACAAACCTTCGATTACCGGCAGCCAGGAAATCGTATTCCCGTCACGATGAACAGCCTTAATCAACAGGGCGATGTTCCATCGTATGAAATTTTCGA TTACATGGGGCAGTACACGCACGGCACGCCCGAAGATGGTGAGCTCCTCGTGCGTAATCGTATCGAAGCACTGGAGCTGAAAGGTAAGACATTCGTAGGG TCGAGCAACTGTCGGGCGATGCGTCCAGGTTACACATTTGAACTGACGCAACATTACGAGCATGACACGGGCTCTCCTGATGATCGGCAGTTCCTGTTAA TGAATATCGAGCATCGCGGCAGCAACAATTACACCTCAGACAGTCAGGCGGGTTACGCTAATAAAATTTATTGTGTACGCAAAAAAATCAAATTCCGGCC TCAGATGGATCTGCTCAAGCCAGGCATTTCCGGCCCCCAAACCGCCATCGTCGTCGGCCCCCCAGGCGAAGAGATCTACACCGACGAAATGGGCCGGGTA AAAGTGCAGTTCCACTGGGACCGCTACGGCAAGTTTGACGACAAAAGCTCCTGCTGGGTCCGCGTCGCTCAATCCGGTGCCAGCGGTGGTTTTGGCAGTA TCCAGATCCCGCGCGTCGGTGACGAGGTGGTGGTCGTTTTCCTTGATGGCAATCCTGACCGTCCGCTCGTCATGGGCAGTCTGTACAACAGCCAGAACAC GCCGCCGTGGTCGCTGCCTGCCAACAAGACCCAGAGTGGTTTCCTGACGCGTTCGGCCAAGGGTGATGGCGGTACGGCCAACTTCTTCCGCTTTGAAGAC AAGGCCGGTGCCGAACAGGTGATTGTGCATGCCGAGCGCAACATGGACACCGAGATCGAGCTGGATGAAAAGCACGAGGTGGGCAATAACCGCAAGGTGA CGGTCGGCGGCACGAATACGGAAATCATCCAGAAAGATACTGTGACGAATGTGCAGCAGGGGTCGTTTACGCTAAAGGTCGACAACCAATTCATTCAGGT GGATGCCAAGCAGTACATCCTTCTCAAAGTGGGCGATAGCAGCATCTCGATCACTCCGGAAGGCATCCAGATAAAAGGCAAAGTGATCAATGTTCTTGGC GAGAGCACCTTCGTCAAAGGTGACCGAGTCGACATCAATAAGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAACGCAGGGCATGGAACGAACAAGTCTCTACGACCGTATTTCCGCAAAACGTATTGCGGATGAGGAGGCAGCACGCAAGGCGGCGCTGGAAGCTCCGGT CGTTGAAGCTGTCCCCGAGCCTGAGCCAGGACCGATCACGCCATTGCAGGACGTGCCCAGCAGTTTCAATTTTGGTGGCTTTAATCTGGCCTTTCCTGAC GGCGTCCTGTTTCGTGATGTCCAGGTTACGCTTGAGTACAAAGGCGAGCCGCTCATGTTGTCTGTCAAACGCAGAGACGTAATGCAGGGTGAGGCGCTGG AAGCACTTTTCGAAAGCTCGGTGCAGACCTTTCGTGAGCGCGACCCTCAACTCCGTATTATTCGTCGGCGGGACTGCACCCTGGTGGGCTGCACTGCGAA AGCGCTGGATTTCCACTTCAAAGAAGGCAGCGCAGAACAACACGCACGACTGGTAGGTGCGCTTGTTCCGCTTGCCGGAAAGGATGTGCTGCAGTGGTTG
Amino Acid Sequence
>Rhs element Vgr protein
MDLSSLFTAQNRRLFKLTMALKGGQELLLDSFAGSEGLSADFGFQLDLISDDASVKLKSAIGQSATIEIELATGGSRYINGHVLSFGNNGSDGGMSRYSA YIGSWLSLIAQRYDSQIYQDQTVEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRESDSHFVMRLLEQEGLFFYFEHTADSHTLIIMDDSTVLTPLP EQPQVRFHTASVTETSDSITHWSSAREFQAGKISVQTFDYRQPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVG SSNCRAMRPGYTFELTQHYEHDTGSPDDRQFLLMNIEHRGSNNYTSDSQAGYANKIYCVRKKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRV KVQFHWDRYGKFDDKSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSGFLTRSAKGDGGTANFFRFED KAGAEQVIVHAERNMDTEIELDEKHEVGNNRKVTVGGTNTEIIQKDTVTNVQQGSFTLKVDNQFIQVDAKQYILLKVGDSSISITPEGIQIKGKVINVLG ESTFVKGDRVDINK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site