Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold13, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCTCCCTGAATTTCCCACAGGACAAGGTACTGACCCGTACCGCCGAACTGGAGAAATACAAGGACAAGACGTTGATCATAGTCGATGCAATGGGGCAGCA TGCTGGCACCACCGCCCGCGAGCTGCTCAAGTCCGGCTTCAAGGCGGCCAAGCTGTCCGGCGGCATTTCCAGCTGGCGCGGCGATAACCTTCCTCTGGTG AAGTGAACATGGCTCAAGTCATCGTCTATTCCAGCGACTACTGCCCGTATTGCATACGTGCCAAACAGCTTCTGCAGAGCAAGAGCGTGGCCTTCGAGGA AATCCGGGTCGACGGCAAGCCGCAGCTGCGTGCCGAAATGACCAAGAAGGCCGGTCGTACTTCCGTACCGCAAATCTGGATCGGCTCGACCCACGTGGGC GGCTGCGATGACCTGTTTGCTCTGGAGCGTGCCGGCAAGCTCGATGCGCTGCTGGCCTGATATCCCTTAATCTTTCAGCCTAATCTGACAAGGATCCGAG
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DNA Sequence for Gene |
>A988_18013
ATGACCGATCAACCGAACAACGACGCCGTTGCCAACGAAGAAAACGGCCCACAATTTTCCCTGCAGCGTATCTACGTTCGCGACCTGTCGTTCGAAGCGC CAAAAAGCCCGGCGATCTTCCGCCAGGAGTGGACGCCGACCGTCAGCCTGGACCTCAACACCCGTCAGAAGCAGCTGGAAGGCGATTTCTACGAAGTCGT GCTGACCCTGTCCGTGACCGTCAACAACGGCGACGAAGTTGCCTTCATCGTTGAAGTGCAACAGGCCGGTATCTTCCTGATCAAGGGCCTGGACGACGGC GCAATGAGCCACACCCTCGGCGCATTCTGCCCGAACATCCTGTTCCCTTACGCTCGCGAAGCCATCGACAACCTGGTCGTACGTGGCTCGTTCCCTGCGC TGATGCTGGCTCCGGTGAACTTCGACGCCTTGTACGCGCAAGAACTGCAACGCATGCAGGAAGCTGGCGAAACGCCGACTGTTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGTTACCGCTGCAAAAAAAAGCGCCTTTCGGGGCGCTTTTTTGTGTCTGTTCAAGAATGGCGGCTGGGCCAAATGGATGCTTTTTATCGCGAAGGAAAC CGACGAAGTCGGGCCGGAAACAGGAGCGAAGGACTTTGCTCACTTTGGTCCCTCAAAGTGAGTCGCCGAGGGGCGAAAAGGTGACCTGAGTCGAGCCTGA ATCTCACTGAATCGCAGAACCGCTATGTGATGCGGAGCATCAGTCTGATTAAGCAAATGCCACACTTAGGCCTAAGCAAATCCGTGCTGACGCCATGCCT CATAGACGGCCACGGCCACTGTATTGGACAGGTTCAGGCTGCGGCAGCCTTCACGCATGGGCAGTCGCAGGCGATGCTCGCTGCTCAGCGAGTCAAGAAT ATCGGCGGGCAGGCCACGGCTTTCCGGACCGAACAGAAAGGCATCGCCTGGCTCGAAGCTCGCATCATGAAAAGGCCGCGAGCCTTTGGTGGTGAAGGCA
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Amino Acid Sequence |
>preprotein translocase subunit SecB
MTDQPNNDAVANEENGPQFSLQRIYVRDLSFEAPKSPAIFRQEWTPTVSLDLNTRQKQLEGDFYEVVLTLSVTVNNGDEVAFIVEVQQAGIFLIKGLDDG AMSHTLGAFCPNILFPYAREAIDNLVVRGSFPALMLAPVNFDALYAQELQRMQEAGETPTVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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