Pseudomonas syringae BRIP39023, A988_04428

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae BRIP39023 genomic scaffold scaffold3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GATGTACTGCTTTATCTGCCTGAAGACGTGAGCAATCCGAATCGGTCGAGCCAGGTCGTGGTGCCTGCCCTGCGCATTCTCGGCGTTGGCGCGCTGCTCG GTCCGGACCGCAACGGCAAGCCGGTGCAGGACCTCAACGCTGACGAACGCCTCAAACAGGAGCAGCAGCGAATCAACGCGCGAACCGTCACGGTCGCGGT GCCGCAGGCCCTGGTGGCGCGCCTGATGCTGGCGTCGCAAACCGGTGTTCTGCGTCTGGCCGTGCGCAGCGCCGACGAGGGCAACCTGCAGGACTACTGG GCCAACGAAGCCGGCGGCCCTGACGCTGCCGAGCGACTCGATTCAGCCAACCGCCAACTGGTCAGCTTCAGACAACTGAGCCTGGGGCCGGCCAGCGCGC CAGCAGCAGGCGCAATCCCGCGTACGTCTCGCGCTGTCGAGGTCATACGCGGTAACCAGATCACGCAACAAACTCCCTGATTGAGCAAGGATTGCATTTG
DNA Sequence for Gene
>A988_04428
ATGAGCTGTTGTTCCGTGCCAGTTATAAAACCCCGGCTGCTGGCGTTAGTCCTTGCAGCACTGTCCGCGCCAGGCGCGTGGGCCGCTTCGGGCAATTGTG CCGGCCTTGCCGCCATGCCGGCGGCCGTGGAAATCGACCAGGGCATTCAACAGGAGGTCCGCTCTGCGGTACCCATCACCCGCATCGCCGTGGGTGATCC GAAAATCGCCGATGTGCACGTCAACGGCACCGACGGTTTTCTGTTGACCGGCGTCGCGCAGGGTACGACCAGCCTGATGGTCTGGACTGCCTGCGCAAGT GCGCCGCGCCAGAGCATGGTCTTCGTCCGTGGCCGGGCGACGACCGCCATGGTCGAGAGTGTCACCGCGCCGTCTGCCGATGCGCAGTTACCCAGCCAGG TGCAGACTGACATCCGCTTTATCGAAGTCAGCCGCACCAAGCTCAAGGAGGCCAGCACCTCGATCTTCGGCAAAGGCTCGAGCAACTTTCTGTTCGGCGC GCCCGGCACGGTGCCGGGCGTCAACGTCACACCTGGCGCTGTGGGCGGCATAACGCCGAGCATTCCGCTGAACAACAGCAATTTCAATATCGTCTGGGGC GGTGGCAGCAGCAAGGTGCTGGGCATGATCAATGCCATGGAAAACAGCGGCTACGCCTACACCCTGGCACGCCCCAGCCTGGTCGCCCTCAACGGGCAAA GCGCGAGCTTTCTGGCCGGCGGCGAATTCCCGGTGCCGGTGCCCAATGGTGAAGGCAACGGTATCTCCATCGAGTACAAGGAGTTCGGCGTGCGCCTGAC CCTGACCCCGACAGTCGTGGGCCGGGACCGGATTCTGCTGAAGGTCGCACCGGAAGTCAGCGAGCTGGACTTCTCGGCCGGTATCACCATCGCCGGGACC ACTGTGCCGGCACTCAACATCCGCCGTACCGACACCAGCATTGCGCTTGCCGACGGCGAGAGCTTCGTGGTCAGCGGCCTGATCAGTTCCAGCAACAGCG GCTCGGTGGACAAGTTTCCCGGCCTCGGCGACATCCCGATTCTCGGTGCATTTTTCCGCAGCTCGCAGATCCAGCGCGACGAGCGCGAACTGCTGATGAT CGTCACTCCGCATCTGGTCCAGCCACTGGCCGCCAACGCCCGCCTGCCGTCACTGCCAGGCGAGGGGCTGCGCACCTATGACCCGAGCTTCCCGCGTCTG TATTTTCTGGAAAACGGCGATTTCGACCGCCGCGACGGATTATCCAAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCAGAGCCTGAGCCAGACCTTCCTGGCAATCACCCGTAATAATACCGACCTGGAGTGGCTGCAAAGTGCTCTGGGTTCGCTGGGTCAGGTGGTCAGTGC CGGTACGGGCAGCCTCGACGACCTCCTGGCGCTGGTGGACGTGACGTTTGCCAGCGTGGTGTTCGTCGGGCTCGACCGTGAGCATTTGATGACTCAGAGC GCCCTGATCGAAAGTGCGCTGGAAGCCAAGCCGATGCTGGCCATCGTTGCGCTCGGCGATGGCATGGACAACCAGTTGGTGCTTAACGCCATGCGCGCCG GGGCCAGGGACTTCGTTGCCTACGGGTCCCGCTCCAGTGAGGTCGCCGGCCTGGTCAGACGTCTGAGCAAGCGCCTGCCCGCCGTGACGCCCAACCCGAA CATGAGCGGCCTGTCGGTGCTGTATGGCGTACAAAGCGACGACGACGGGGCCTTGATCGCGACGCACCTGGCGATGGTCGTGCACAAGACCGGCCAGCGC
Amino Acid Sequence
>type II and III secretion system protein
MSCCSVPVIKPRLLALVLAALSAPGAWAASGNCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWTACAS APRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWG GGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRL YFLENGDFDRRDGLSK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site