Pseudomonas syringae BRIP39023, A988_03003 (lpxC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae BRIP39023 genomic scaffold scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTCCTGACCTGTCTCTGGGTGAGTACTCGGACGTGGGTAGCATCATCGAAGCGTTCGCTTCCGAGCACGCGATGGTCAAGGTCGGTACCGTTATCGAT CCGGACATGCGTGACGAGTTGCACGTGACCGTGGTTGCCACCGGCCTGGGCGCGAAAATCGAGAAACCTGTCAAGGTCATCGACAACACGCTGCAGACCA CCCAGCAGGCTCCTGCGCAGCAGGCGTCCCGTCAGGAAGCACCATCGGTCAACTACCGTGACCTGGATCGTCCTACCGTGATGCGCAATCAGGCACACGC AGGCGCTACAGCAGCGGCGAAGATGAATCCAAACGATGATCTCGATTACCTGGACATCCCGGCTTTCCTGCGTCGTCAGGCCGATTGATGAAATGTATCA GGGGTATTAGGGTGATTGGTGTTCAGCAAAGGCATGGTCTGCTATCATCGCCAGCCTTTGTTGATACCAGTTCGCAACTTGCGCTGAAGCGGCCCATGCC
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| DNA Sequence for Gene |
>A988_03003
|lpxC
ATGATAAAACAACGCACCCTGAAAAATATTATCCGTGCCACAGGTGTAGGCCTGCACTCCGGGGAGAAGGTTTACCTGACCCTCAAGCCCGCACCTGTGA ATACCGGCATTGTGTTTTGCCGAGCTGACCTTGACCCCGTCGTGCAGATCCCTGCGCGTGCGGAAAACGTCGGTGACACCACTCTGTCGACCACTCTGGT CAATGGTGATGTCAAAGTCGACACGGTAGAACACTTGCTCTCGGCCATGGCTGGCCTTGGCATCGATAACGCCTACGTCGAGCTCTCTGCCTCCGAAGTT CCTATCATGGACGGCAGCGCAGGCCCTTTCGTATTCCTGATTCAATCGGCAGGCCTGGAAGAACAGGACGAGCCGAAGAAATTCATCCGTATCCTGCGTG AAGTCACAGTCGAGGAGGGCGGTAAACGCGCTACTTTTGTGCCTTTCGAAGGGTTCAAGGTCAGTTTCGAGATCGATTTCGATCACCCCGTCTTCCGTGA CCGCACCCAGAGTGCAAGCGTGGACTTTTCCAGTACTTCCTTCGTGAAGGAAGTCAGCCGTGCCCGGACCTTCGGGTTCATGAGTGATATCGAGTACCTG CGCAAGCACAACCTCGCACTCGGCGGCAGCGTGGAAAACGCCATCGTGGTCGACAAGGACGGTGTACTGAACGAAGACGGCCTGCGTTACGAGGACGAAT TCGTCAAACACAAAATCCTCGACGCCATCGGTGACCTCTACCTGCTGGGCAACAGCCTGATTGGTGAGTTCCGGGGTTTCAAATCGGGGCATGCACTGAA CAACCGTCTGCTGCGTACGTTGATCGAGCAGAAAGACGCTTGGGAAGTGGTGACTTTCGAGGATGCCAGTACGGCACCTATTTCTTACATGCGTCCTGTC GCGGCCGTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGCTTTACTCTCTTTCCTTTTGTTCTTTAAAGGCTGCCCTCGGGTGGCCTTTTTTTATGGGTTTTTCAGGGGAGGTCAGTGCTGGCGGCGATCAGGC AGGGTTACTTCCTGTCCTTTGCATGGCTGGCCAGTCTTTCCAGTGCGGCACGCAAGCGCGGATCGGTGATGCCTTCAGCGGTGGCCTGAATGTTTTCGGC AGCCACTGCCGACAGGTCGATGGTGTGCGTGGCAGCTCCGCGTGGCGCTTCAGGCGGCTGCACCTTGAACACAATTCGGGTCAGGTTGATGAATTCGTCG AAGGCCATCATTTGCCGGTGCAGGCGTTTCTGCTGGTAGCGCAGGCGCGTGGCCCAGTGACCGTCCGTCACGATCAGCAACAAGGTACCTTCGCGCCACG ATGCCACGCGACAATGCTCCCGGGCCGCTGGTTGCAGCTGGCTTTCGAGCAGGCGCTGCAAGTGGCTGAGTCGCTCGGCGTGACGAAATATAGCCTTCAG
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| Amino Acid Sequence |
>UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVNTGIVFCRADLDPVVQIPARAENVGDTTLSTTLVNGDVKVDTVEHLLSAMAGLGIDNAYVELSASEV PIMDGSAGPFVFLIQSAGLEEQDEPKKFIRILREVTVEEGGKRATFVPFEGFKVSFEIDFDHPVFRDRTQSASVDFSSTSFVKEVSRARTFGFMSDIEYL RKHNLALGGSVENAIVVDKDGVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNRLLRTLIEQKDAWEVVTFEDASTAPISYMRPV AAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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