Pseudomonas veronii 1YdBTEX2, H736_RS0115225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd04862 | PaeLigD_Pol_like | IPR033651 | LigD polymerase domain, PaeLigD-type | 226 | 452 | 0.0 |
| NCBIfam | TIGR02777 | JCVI: DNA ligase D, 3'-phosphoesterase domain | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 5 | 163 | 1.7E-70 |
| Pfam | PF13298 | DNA polymerase Ligase (LigD) | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 39 | 143 | 9.4E-40 |
| PANTHER | PTHR42705 | BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD | - | - | 167 | 487 | 7.9E-98 |
| NCBIfam | TIGR02776 | JCVI: DNA ligase D | IPR014143 | DNA ligase D | 192 | 482 | 1.5E-112 |
| Gene3D | G3DSA:3.90.920.10 | DNA primase, PRIM domain | - | - | 216 | 498 | 4.3E-98 |
| NCBIfam | TIGR02778 | JCVI: non-homologous end-joining DNA ligase, polymerase domain | IPR014145 | DNA ligase D, polymerase domain | 209 | 453 | 5.5E-89 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.