Pseudomonas stutzeri TS44, YO5_05921

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF16448 LapD/MoxY periplasmic domain IPR032244 LapD/MoxY, periplasmic domain 24 145 5.4E-37
CDD cd06225 HAMP - - 174 218 4.86558E-5
CDD cd01949 GGDEF IPR000160 GGDEF domain 239 387 2.26586E-20
Gene3D G3DSA:3.30.110.200 - - - 22 98 1.8E-27
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 241 388 8.63E-18
Pfam PF00563 EAL domain IPR001633 EAL domain 412 641 8.6E-41
SMART SM00052 duf2_2 IPR001633 EAL domain 406 642 2.4E-10
Pfam PF00672 HAMP domain IPR003660 HAMP domain 168 219 4.5E-8
Gene3D G3DSA:6.20.270.20 LapD/MoxY periplasmic domain IPR042461 LapD/MoxY periplasmic domain, C-terminal 101 151 2.9E-19
SMART SM00267 duf1_3 IPR000160 GGDEF domain 225 404 6.6E-15
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 237 387 1.2E-20
CDD cd01948 EAL IPR001633 EAL domain 412 643 2.21247E-39
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 412 644 6.41E-41
SMART SM00304 HAMP_11 IPR003660 HAMP domain 171 223 1.1E-7
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 173 642 1.7E-54
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 404 645 2.4E-49
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 219 393 7.9E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.