Pseudomonas stutzeri TS44, YO5_02508
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri TS44 Contig00010, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGCGGTCATTCCTCTCTACTAAACACGGGACCCGTTCCCGGCCTGTTCACTCAAGGAGCCCATCATGGCACTGAGCGTTGAAGAAAAAGCCCAGATCG TTAACGAGTACAAGCAAGCTGAAGGCGATACCGGTTCTCCGGAAGTGCAGGTTGCCCTGCTGACCGCCAACATCAACAAGCTGCAAGGTCACTTCAAGGC CAACGGCAAGGACCACCACTCCCGTCGTGGCCTGATCCGCATGGTCAACCAGCGCCGCAAGCTGCTGGACTACCTGAAGGGTAAGGACACTACTCGTTAC AGCGCCCTGATCGGCCGTCTGGGTCTGCGTCGCTAAGACGCGCCCGAGCTGGGAGCCGGAAGCTGGAAGCCTGAAGTTGACACCGGGATATCCCGGGATC GACTTCGGTCTTCCAGCTTTTGGCTTTCTTGCAGGTCGTTTCGGGCCGACTCCCGGACGTTCTGCCCATTTCCCCAAGGCAACAAAGAGAAGGAAAAACC
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| DNA Sequence for Gene |
>YO5_02508
GTGAATCCGGTAATCAAGAAGTTTCAATTCGGTCAGTCGACCGTAACCCTGGAGACGGGTCGTATCGCCCGCCAGGCCTCTGGTGCCGTGCTGGTCACCG TTGACGACGACGTTGCCGTACTGGTCGCCGTAACCGGTGCCAAGACCGCCGATCCGAGCAAAGGCTTTTTCCCGCTCTCCGTGCACTACCAGGAGAAGAC CTATGCGGCCGGCAAGATCCCCGGCGGCTTCTTCAAGCGCGAGGCGCGTCCTTCCGAGAAGGAAACCCTGACCTCGCGCCTGATCGATCGCCCGATCCGT CCGCTGTTCCCGGAAGGCTTCCAGAACGAAGTGCAGGTCATCTGTACCGTCATCTCCACCAGCAAGAAGACCGATCCGGACATCGCGGCGATGATCGGTA CCTCGGCTGCCCTGGCGGTATCCGGCATTCCGTTCGACGGCCCCATTGGTGCCGCGCGCGTGGCCTTCCACCCGGAAACCGGCTACCTGCTGAACCCGAA CTACGAGCAGCTCAAGGCTTCCAGCCTGGACATGGTCGTGGCCGGTACCAAGGACGCCGTGCTGATGGTCGAATCGGAAGCCCGCGAGCTGACCGAAGAC CAGATGCTGGGCGCCGTGCTGTTTGCTCACGAAGAATTCCAGGCCGTGGTCAAGGCTGTCGAAGAGCTCGCCGCCGAAGCCGGCAAGCCGCGCTGGAACT GGACCGCTCCGCAGGCCAATACCGCGCTGCTGGACGCCATCCGCAGCGAGTTCGGCGACGCCATTTCCCAGGCCTACACCATCACCATCAAGCAGGACCG CTACGCGCGCCTGGGCGAGCTGAAGGACCAGATCGTCGCCAAGTTCTCCGGCGAAGAAGGCCAGCCGTCCGCCGGTGAAGTGAAGGATGCCTTCGGTGAG ATCGAATACCGCACCGTTCGCGAAAATATCGTCAACGGCAAGCCGCGCATCGACGGTCGCGACACGCGTACCGTGCGTGGCCTGAACATCGAAGTCGGCG TGCTCGACAAGACCCACGGCTCGGCGCTGTTCACCCGCGGCGAAACCCAGGCGCTGGTCGTCGCTACCCTCGGCACCGCCCGTGACGCGCAGTTGCTGGA CACCCTGGAAGGCGAGAAGAAAGATCCCTTCATGCTGCACTACAACTTCCCGCCGTACTCGGTCGGCGAGTGTGGTCGCATGGGCGCCACCGGTCGCCGC GAAATCGGTCATGGCCGCCTGGCCCGTCGTGGCGTCGCCGGCATGCTGCCGAACGCGGACGAGTTCCCGTACACCATCCGTGTGGTGTCCGAGATCACCG AGTCCAACGGCTCCAGCTCGATGGCTTCGGTCTGCGGTGCTTCGCTGGCGCTGATGGACGCTGGCGTGCCGATGAAGGCGCCGGTCGCCGGTATCGCGAT GGGCCTGGTCAAGGAAGGCGAGAAGTTCGCCGTGCTGACCGACATCCTCGGCGACGAAGACCACCTCGGCGACATGGACTTCAAGGTAGCCGGTACCGCC AAGGGCGTCACCGCGCTGCAGATGGACATCAAGATCCAGGGCATCACCGAAGAGATCATGGAGATCGCCCTGGGCCAGGCCCTGGAAGCGCGCCTGAACA TCCTCGGCCAGATGAACCAGGTCATCGCCCAGTCGCGCAGCGAGCTGTCGGCCAACGCGCCGACCATGCTGGCGATGAAGATCGACCAGGACAAGATCCG CGACGTGATCGGCAAGGGCGGCGCCACCATCCGTGGCATCTGCGAAGAGACCAAGGCCTCGATCGACATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAGACCAAGGAAGCGGCCGAGGCGGCCAGGCAGCGCGTGCTGGGTATCACTGCCGAAGCCGAGATCGGCAAGATCTACGTCGGCAAGGTCGAGCGCATCG TCGACTTCGGCGCGTTCGTCAACATCCTGCCGGGCAAGGATGGCCTGGTGCACATCTCGCAGATCAGCGACCAGCGCATCGAGAAGGTCACCGACGTGCT CAAGGAAGGCCAGGAAGTGAAAGTGCTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTCTCGATCAAGGACGTGGCGGCGGCGGAAGCGTCGGGC GTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGAGCGCTTCGTGAACAGAAAAGGCCCTGCGGGGCCTTTTTTGTTGCGCTGGCGCCGTGCAATCGGGACCGCGGCAACACAGCATCACCGATCGACGTA CGCCCGCCGGCTGATTGCAAGTTGCAAGTGTTGCGTTGACAAAACGTGCATAGTGCACGCTGGTCGTTGCCTGAGGGTTTTTATAACTGATTGAATTTAA ACAAGATTAATGGTGTGGGCGATTTGGCACGGCGCTTGCGCTCTTAACTCCTGAGCTCCGGGATCGGCGCAATGCCCGGGCAACCACGAGAAACAGGAGT GACACCATGAAAACCATTCAGAACGCTCTCACTGCCGCCGCCGTTACTGCCGCTCTCAGCCTGCCGCTGGCCGGCGTGGCCATGGCTGACAGCACGCCTG CTATCGAGAAAGCCGACACCGTGATGCTGGCCACCAATGAGAATGTCGAGCAGGCCAAGGACGCCGCATCCGACACCTGGATCACCACCAAGGTGAAGTC
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVAVLVAVTGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIR PLFPEGFQNEVQVICTVISTSKKTDPDIAAMIGTSAALAVSGIPFDGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEARELTED QMLGAVLFAHEEFQAVVKAVEELAAEAGKPRWNWTAPQANTALLDAIRSEFGDAISQAYTITIKQDRYARLGELKDQIVAKFSGEEGQPSAGEVKDAFGE IEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRR EIGHGRLARRGVAGMLPNADEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQVIAQSRSELSANAPTMLAMKIDQDKIRDVIGKGGATIRGICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQRIEKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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