Pseudomonas taeanensis MS-3, TMS3_RS0123430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGCGCGCGAGGAGCAGGTCGATCCGCTCAGCCTGAAAGGTTCCTATGCCGGTGCCATGGGCTTGCCGCAGTTCATGCCGAGCAGCTTCCGCGCCTATG CGGTGGACTTCGATGGCGACGGCCATATCAATATCTGGACCAACCCGGACGATGCCATCGGCAGCGTCGCCAGCTATTTCAAACGGCACGGTTGGCAGCC GGGTGAGCCGGTAGTCAGCGCTGCCAGCATCAAGGGCGAGCAGGCCGAGCAAGGCCTGACCCAAGGCCTTGATCCGGTGAAGACAGCCGCCGAGCTGCGC CAGCTGGGCTGGGCCAGCGCCATGCCTCTGACCGACGAACTGCCCGTCACCGCCTTTCGTCTGGAAGGCGCCGAGGGCGACGAGTATTGGTTGGGCCTGC CGAACTTCTTCGTGATTACCCGCTATAACCGTAGCGTGATGTACGCCATGGCGGTGAATCAACTGGCCGAGTTGCTGGTTGACGCACGAGGGGCGCACTG
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| DNA Sequence for Gene |
>TMS3_RS0123430
ATGACGCGTGTGCCGTTTAAGCTCGCCGCCTGTGGCGCACTCGCGCTGTTGCTGGCGAGCTGTGCCTCCAGTCGTGCGCCGCAGCCTGTTGCTCCGACGC AAGCGGGCGGTGGGATTTCCGGTCCGGGTAATTACAGTCGTCCGCACAAGGATGGCGCACCCTGGTGGGACGTCGATGTGTCACGCATCCGCGACGCGGT GCCGATGCCGCATAACGGCGCTTATAAGGCCAGCCCCTATACCGTGCTGGGCAAGACCTACTACCCGATCCCCGATGCCCGGCGCTATCAGGCGACTGGT CCGGCGTCCTGGTACGGCACCAAGTTCCACGGCCAGGCCACCGCCAACGGCGAAACCTACGACCTGTACGGCATGACCGCAGCGCACAAGACCTTGCCGC TGCCCAGTTATGTCAAGGTGACCAACCTGGAAAACGGCAAGACTGCGATCCTGCGGGTCAACGACCGCGGGCCGTTCTATTCCGATCGGATCATCGACCT GTCCTTTGCTGCGGCGAAAAAACTCGGTTATGCCGAGAGCGGCACGGCACGCGTCAAGGTCGAGGGTATCGATCCACAGGAATGGTGGGCCCAGCGCGGC CAGCCGGTGCCGATGGTGCTCGCTCAGCCGCAGCAGGTTGCTCAGGTGAAGACAATCGCACAGCCGCTAGCGGCTCCGCTCGAGCAGTATGCGCCGCCCG CGCAGCAGCACGCGGCTGCGGTGCTGCCGCTTGAAGTCAGCGCAAAAAAAAACGTTTCAGTCGCAGCCTCTGGCCTGTATCTCCAAGTGGGCGCCTTCGC CAATCCGGACGCTGCTCAGCTGCTCAAGGACAAGTTGAGCGGGACAGTAACTGCGCCGGTGTTCATCAGCTCAGTGGTGCACAACCAGCAGATCCTGCAC CGCGTTCGTCTGGGCCCGATCAGCAGTCAGGGCGAGGCTGAGCAATTGCAAGACAGCGTGCGGCTGGCCAATCTCGGTCCATCGAGGCTGGTGAAGGCGG ATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGGCACTTATCGGCCGTTCGCCAGACTAAGCACCAAGCCGAGGCTGTTTACCCGGCACGGCACCCCTAATTTGCCCTTGCGGGCCTGTTTGACCCTTA GCAACTTTGAGAGACGGATGAATATCACCAGTTTTACCCAACGCGTTTCCTTGTCCCTACTGCTGCTCACTGCGCCGGTCGCCTGGGCCGCTCAAATGGT GATTCCGGCACCGCCACAGCTGGCAGCTAAGTCCTATGTACTGATGGACGCCGCGAGCGGCAACATCCTGGTCGAGCACAACGCCGATGAGCGTCTGCCG CCTGCCAGTCTGACCAAGTTGATGACCGCCTACCTGGCGACTCTGGACATCAACCGCGGTCAGATCAAAGAAACCGACATGGTGCGCATCAGTGAGAAGG CCTGGCGCATGGGCGGCTCGAAGATGTTTATCGAGGTGGGCAAGGAGGTCTCGGTCGATGACCTGCTGCACGGCATCATCATCCAGTCCGGCAACGACGC
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| Amino Acid Sequence |
>lipoprotein
MTRVPFKLAACGALALLLASCASSRAPQPVAPTQAGGGISGPGNYSRPHKDGAPWWDVDVSRIRDAVPMPHNGAYKASPYTVLGKTYYPIPDARRYQATG PASWYGTKFHGQATANGETYDLYGMTAAHKTLPLPSYVKVTNLENGKTAILRVNDRGPFYSDRIIDLSFAAAKKLGYAESGTARVKVEGIDPQEWWAQRG QPVPMVLAQPQQVAQVKTIAQPLAAPLEQYAPPAQQHAAAVLPLEVSAKKNVSVAASGLYLQVGAFANPDAAQLLKDKLSGTVTAPVFISSVVHNQQILH RVRLGPISSQGEAEQLQDSVRLANLGPSRLVKAD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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