Pseudomonas sp. PAMC 25886, MUM_RS0105640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004495, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCAATGGTTATAAAAACATCCCGATCAACGAGTGGCTGTCGTTCTACGGCATGGCGGGAGTGGGTTTGGCCCAGATTGACGCCGAGGGTTACCAGACC AACAAGACCCGGCGCTTCGCCAGCAACCGCCAGCACAATTTCGCCTACAGCGTAGGCCTCGGGCTGGACGCCAAGGTCAGCGAAACCCTGACCCTGGGCA CCGGCTGGCGCTACGCGGACATGGGCAGGATTGAAACCGGCTACAACACCTTCGCCAACCGTATCAACGCCCGCGACGAGCAGCTGAAGGGCAAGCTCAA GGAGCAGAATGTGTTTCTGGAGGCCCGCGTAGCCTTCTAGGCCAAGCCCCAGGGATGCCGCCGCCAGGGCGGCATTTTTTGACCAGAGGGTGACGATTCA TTCACAGACGACAGGCTATATTCAGTCGAGCCGTGCAACCATGCCCGGCATTGATATGCTTTTTTCTCATCGTCTACCTGAAACGGATGCCTTCAACGCC
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| DNA Sequence for Gene |
>MUM_RS0105640
ATGAGCCAACTGCCTTTTCTGCCGTTTTCCAAGCCCACCATTGATGAAGCCACCATCTCGGCGGTGGGCGACGTACTGCGCTCCGGCTGGATCACCAGCG GGCCGAAAGTGCAGGCGTTCGAAGCGCAGCTGTCGGAATACTTTGGCGGGCGCCCGGTGCGCACCTTCAACTCGGGCACCTGCACCATGGAGATCGCCTT GCGCATCGCCGGCATCGGGCCCGGGGATGAAGTTATCACCACCCCGATCTCGTGGGTCGCCACTGCCAACGTGATTCTGGAGGTCGGCGCCACGCCAGTG TTCGCCGATATCGACCCGGTCACCCGCAATATCGACCTGGCCCAGGTAGAAGCGGCAATCACCCCGCGCACCAAGGCGATCATCCCGGTGTACCTGGCCG GCCTTCCCGTGGACATGCCGCTGCTCTACGCACTGGCCAACAAGTACAACCTGCGCATTGTCGAAGATGCTGCCCAGGCCCTGGGCTCCAGCTGGGATGG CGAACGTATAGGCTCTACGGGCGATTTCGTGTCATTCAGCTTCCAGGCGAACAAGAACATCACGTCGTCCGAAGGCGGCTGCCTGGTGTTGAACACCCCT GAAGAAGCACGCCTGGCCGAGAAATATCGCCTGCAAGGCGTTACCCGCACCGGCTTCGACGGCCTGGACGTGGATGTGCTCGGCGGCAAGTTCAACATGA CCGACATTGCAGCGGCCATCGGCCTGGGTCAGTTTGCCCATATCGAGAAAATCACCGCCCACCGCCAGGCATTGGCGCGGCACTATTTCGAGTGTTTCGG CAGTGATTTTGAAGCGCAGTACGGTGCGCAATTGCCACCGGCGGATTTCGAAAACAGCAACTGGCACCTGTTCCAGCTGGTACTGCCAGAGCGCCAGGAC GGTTTGCCGGCCCGTGCCACATTCATGGAGCAGATGCAGGCCCATGGCGTCGGCATTGGCTATCACTACCCGCCGATCCACCTGCTGAGCTTGTACAAGG CGCAGGGATTCAAGGAAGGCATGTTCCCGGTAGCGGAAAAAGTGGGGCGTTTGATTGTGTCGCTGCCGATGTTCACGGCGATGACGAAAGCGGACGTAGA GCGTTCGGTAGCGGCGGTAAAAGCGGTGTTGAAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAAAACCTTTGCGGGAGCCGGTTGCCGGCTCCCGCAGCGGGATCACTCGCCGATGGCAGCCTTGTAACCGGCAGCGTCCAGCAGTTTTTCCAGGTCAGCC GGGTTGCTTGGCTTGAGCTTGAAGATCCAGGCCCCGTAAGGGTCGGAGTTCAACAGCTCTGGCTCACCGCTCAAGGCGTCGTTCACCGCGATCACTTCGC CAGCAATTGGCGAGTAGATATCCGAAGCGGCCTTCACCGATTCAACCACGCCGGCCTGGTCAGCCGCTTTGAACACGTTGCCGACTTCGGTCAACTCAAC GAACACCACATCCCCCAATGCTTCCTGGGCATGGTCCGAGATTCCGACGGTCACGGTGCCGTCAGCTTCCAGACGGGCCCATTCGTGACTTTCGGCAAAA CGCAGGTCGGCAGGGATATCGCTCATAGTCTGTGTCCTCAAGAAAAAATGTCAGCGGCCATTGGCCCGCCGGAAAAGTTAAATCAATGTTTTGCCATGGC
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| Amino Acid Sequence |
>aminotransferase DegT
MSQLPFLPFSKPTIDEATISAVGDVLRSGWITSGPKVQAFEAQLSEYFGGRPVRTFNSGTCTMEIALRIAGIGPGDEVITTPISWVATANVILEVGATPV FADIDPVTRNIDLAQVEAAITPRTKAIIPVYLAGLPVDMPLLYALANKYNLRIVEDAAQALGSSWDGERIGSTGDFVSFSFQANKNITSSEGGCLVLNTP EEARLAEKYRLQGVTRTGFDGLDVDVLGGKFNMTDIAAAIGLGQFAHIEKITAHRQALARHYFECFGSDFEAQYGAQLPPADFENSNWHLFQLVLPERQD GLPARATFMEQMQAHGVGIGYHYPPIHLLSLYKAQGFKEGMFPVAEKVGRLIVSLPMFTAMTKADVERSVAAVKAVLKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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