Pseudomonas sp. PAMC 25886, MUM_RS0116855
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004525, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCACGCGGTTCAGTGTGCGGGTGGGTGAGCAGCGCAGCCGAGTGGCGGTGACCGAAGGTGCGGTGGAGTTGCTGCCGGAGCATGCCAGCCAGGGCGTGA TCGTCAAGGCGGGCGAGCAGGGCGCCTTCAGCGCAGACGGTGTGGCCGCTGTGGAGCCGTTGGACGTCAGCGCCCTGACCTGGGAAAACGGCATGCTCCT GGCCCAGCACATGCGCCTGGCGGACTTGCTGGATGAGTTGGGGCGCTATCGCGCCGGCGTGCTGCGCTGCCATGACTCGGTGGCCAACCTCACCGTGTCG GGGGCGTTTTCCCTGCGCGATACCGACGCCAGCCTGCACCTGTTGCAGGAAACCTTGCCGGTTAAGGTCAGCAGCGTCACCGGGTATTGGGTGACGGTCG AGCCGCGCTGAACTTTTTTCAACGTTCGCTGATACCTTTTTCGTTGTCGTTCGGTGTAGGGGAGAACCCTCAACTTTGCGCCGCGCCGACAGGAATGCCC
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| DNA Sequence for Gene |
>MUM_RS0116855
ATGACCGCCAGATCGCTCCCAAACTGCCCCCGCCCCCTGAAAGCACTGAGCCTGGCAGTCGCCCTGGCGGCCATCGTGCCGCTGCAAAGCGCCCAGGCAG AAGACGCGGCGCAAAGCAGTGCGGCGCGCAGCTATCACCTCGCGCCGGGGCCGCTGGGGAATGTGCTGGCGCAGTTTGCAGCGCTGTCCGGGGTGCCGTT GTCGTTCGATTCCACGCTGCTCAACGATCAACAAAGCCCGGGGTTGCAAGGCAGCTACAGCGCGCAATCGGGCTTTGCCCAGTTGCTGCAGGGCAGCGGT TATACCCTGCAGGGCACCGGCGCCAATGGCTACACCGTGGTGCCTCAGGCCAGCGGTGGCGCATTGGAGCTGGGCGCCACCACCATCAGCGGCGAGGCGA GCGGGGCGCAGGCGGACACGTACGGCGGCGGCCAGGTGGCACGTTCGGCACGCCTGGGCGTACTGGGCAACCGGTCCATCAGCGACGTGCCCTTCAGTGT GGTCAGCTACACCTCGAAAACCATCGCCGATCAGCAGGCGCGAACAGTCGGCGACGTGCTGCTCAACGACGCCTCGGTGCGCCAGTCGGCGGGGTTCGGT AACTTCTCCCAGGTGTTCACCATTCGCGGCCTGCCGCTGAGCACCGATGACATCGCCTTCAACGGCCTATACGGCGTGCTGCCCCGGCAGATCATCACCA CCGAAGCCCTGGAGCGGGTGGAGCTGTTCAAGGGCCCCAACGCGTTTGTCAACGGCGTGTCGCCCTCGGGCAGCGGGATCGGCGGCAGCGTCAACCTGGT GCCCAAGCGCGCCGAAGACACGCCAACCCGCAGCGTCACCCTCGATTACGCCAGCGACAGCCAGGCCGGCGGCCACCTGGACCTCGGCCAGCGCTTTGGC GAAGACAACCGCTTCGGCGCCCGGGTCAACCTGGCCAGGCACGGTGGCGACACCGCCGTGGATGACGAAAACAAAAGCTCGCAGTTGATTGCCGTCGCGC TGGATTACCGCGGCGAGCGCCTGCGGGTTTCCACCGATTTTGGCTATCAGAAAGAGCGCATCAATAATGGTCGTGCGGTGGTGTACCCGACCGGTACCCA GGTGCCCCATGCGCCGTCGGCCAACGATAATTACGCCCAAAACTGGAGCTGGTCGGAGCTGGAAGACACTTACGGCATGGTGAATGCCGAATATGATTTG AACGATAACTGGACGGCCTACGCCGCAGGCGGCGCCAAGCACACCCGGGAGAACGGCCAGTATTCATCGTTGTATGTCGGCAACGATGGCAGCGCCAAGG TGGGCTTCCTGTATTCGCCCCACGACGAAGACAACAAAAGCGCAATGGCCGGCTTGAACGGCCACTTCGCTACCGGGCCGGTGACCCATCAGATGAACCT CGGGCTGTCGGGGATCTGGGGCGAGCAACGCTCGGCGTATGAGGCGATCCTGGTGGCGAACCGTCAACCCGGCAACCTGTACAACCCGACGCAAACACCG CGGCCGACCAACACCTATTTCGGCAGTGATATTCACGACCCGCGTGTTGTGGGCAAGAACCGGATCAAGAGCGCGGCGGTGTCCGACACCCTGGGCTTTA TTGATGATCGGGTACTGTTGACCCTGGGGGTGCGGCGCCAGACGATCGAGGTGGACAGCTGGAACACCGCCTCCGGTGTGCGGGGCACGCCGTATTCGGA GTCCATCACCACGCCGGTCTATGGCCTGGTGATCAAACCGTGGGAGCACGTGTCGTTCTACGCCAACCGCATTGAAGGCCTGGCGCAGGGCCCGACGGCA CCGCTCACGAACGTCACCAACCCCGGCGAAGTATTCCCGCCCAAGCGCAGTAAGCAGACGGAAGCCGGGGTCAAGCTGGACTGGGAAAACTACGGCGCCA CCCTGGGCGTGTATCGCATCGAACAGCCGAACAATGCCACCACCCGCTTCCCGGGGCAGCGGCTCGACACCTTTACTGTCGACGGTGAGCAGATCAACAA AGGCGTAGAACTCAACGTGTTCGGTGAGCCCATCGACGGCCTGCGTCTGCTGGCCGGCGCTACCTGGATGGACACCGAACAGAAGAACACCTCCAACGGC GCCACCGACGGCAACCGCGCCGCCGGCGTGCCGCGCTTCCAGTACAACGTCGGTGCGGATTGGGACGTGCCGGGCCTCCAGGGCGCGGCGGTCAGCGCAC GGATGCTGCGCACCGGTGGCGAATACGTCAACGCCGCCAACAGCCTGAGCATTCCGGCCTGGACCCGCGTCGACCTGGGCGCGCGGTATGGCTTCAAGGC CGACGACAAGTACATCACCTTGCGCGCCAACGTGGAGAACGTGGCGAACAAGGCGTATTGGTCGTCGGCGTCGACGGCCAATAACTACCTGACCCAGGGC GAGCCGCGGACCGTGAAGTTATCGGCGACGGTGGATTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCCCAAACCTATGAATACCTTGTGGCGAGGGGAGCTTGTTGTGGTGAGGGGGCTAGTTGTGGCGAGGGAGCTTGCTGTGGCGAGGGAGCTTGCTCCC GCTGGGCTGCGAAGCAGCCCCCAAAAGGCCCCGGTGTTATTCCAGGTGGATCGCAGTTTACCTTATTGGGGCCGCTTCGCAGCCCAGCGGGAGCAAGCTC CCTCGCCACAACAACAGCGCCAAAAGGTCAACCCGCCTTCACTTCAATCCGGTCAAACCCCTTGAGGCGATACAGCATTACCGAGATCGCCCAACTGGCC ACAAAGATCCCGATGATCATGTAGCCCAGCATCCCGAAGCTGTCGTTCAGCGCGCCGATAAAGCCCCAGAACGCCCCCTTCAAATCCAGCTGGTCACCAA TCAACCCCAACGCTTCGATACTGCCGATCACCACCGCGACCACTACCGACACCAGCGTAATGGTCATGTTGTAGTAGATCTTGCGGATCGGCTTCATGTA
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| Amino Acid Sequence |
>TonB-denpendent receptor
MTARSLPNCPRPLKALSLAVALAAIVPLQSAQAEDAAQSSAARSYHLAPGPLGNVLAQFAALSGVPLSFDSTLLNDQQSPGLQGSYSAQSGFAQLLQGSG YTLQGTGANGYTVVPQASGGALELGATTISGEASGAQADTYGGGQVARSARLGVLGNRSISDVPFSVVSYTSKTIADQQARTVGDVLLNDASVRQSAGFG NFSQVFTIRGLPLSTDDIAFNGLYGVLPRQIITTEALERVELFKGPNAFVNGVSPSGSGIGGSVNLVPKRAEDTPTRSVTLDYASDSQAGGHLDLGQRFG EDNRFGARVNLARHGGDTAVDDENKSSQLIAVALDYRGERLRVSTDFGYQKERINNGRAVVYPTGTQVPHAPSANDNYAQNWSWSELEDTYGMVNAEYDL NDNWTAYAAGGAKHTRENGQYSSLYVGNDGSAKVGFLYSPHDEDNKSAMAGLNGHFATGPVTHQMNLGLSGIWGEQRSAYEAILVANRQPGNLYNPTQTP RPTNTYFGSDIHDPRVVGKNRIKSAAVSDTLGFIDDRVLLTLGVRRQTIEVDSWNTASGVRGTPYSESITTPVYGLVIKPWEHVSFYANRIEGLAQGPTA PLTNVTNPGEVFPPKRSKQTEAGVKLDWENYGATLGVYRIEQPNNATTRFPGQRLDTFTVDGEQINKGVELNVFGEPIDGLRLLAGATWMDTEQKNTSNG ATDGNRAAGVPRFQYNVGADWDVPGLQGAAVSARMLRTGGEYVNAANSLSIPAWTRVDLGARYGFKADDKYITLRANVENVANKAYWSSASTANNYLTQG EPRTVKLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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