Pseudomonas sp. PAMC 25886, MUM_RS0116085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004525, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACAACGGGATGCCCAGCTCCAGCAAATGGCTGTGCACACCGCGCACGCCGAGGGTGCGCTGGTTGTCGGCAGCGGTCAGCAGGGCGTCGATGACCTTC AGCCGGATCAGGCTGGTGCGCAGGCCAAAGCACTTGAGCAAATGACGAATGCGCTGGTTGCCATGTTCCGGCGCCTTGCCGAACGCCTGGTTGCCGGAGC CAAAAGCGCCGTCATGCATGGATGAGTGTCCTTCCGTGGGCAGTTGCGAGTTGTACATGCAGAAACTCCTTATCAGAGCCTGATCAGGAAAATGATGGTG CTCTTAACTAATAAGACGTACGAGCAGCCGAAATCATGAAGCGCGGGATGTAGAAATTTTGTCGGTAACATCCCGGAGACATATCGACATGTCTGAATAA ACGCCTGCGGCTGCTAAATTATTCCCGGTTTTTACGTCTTAACTGAGGTGTTGGCGAAGCTGTCCCTCGTCACGGTGTTTAATTTGGCTGTGGAGTCTGC
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| DNA Sequence for Gene |
>MUM_RS0116085
GTGATTATTACCAACGGGTTGTTCAGGGTGTGCGTGGCGGGTGCGTTGCTGGGGCTGAGTCTTTCGGCCACGGCGCGGGTGCAGGAGCAGCAGGCCACGG CCGAGATCCGCCGCACCGGTTTTGGTGTCCCCCATATCCGGGCCAGCGACGAGCGCGGGCTGGGGTTTGGCATCGGCTATGCCTATGCCCAGGACAACCT GTGCCTGCTGGCCAATGAGGTGGTGACGGTCAACGGTGAGCGCGCCAGGTACTTCGGCCCCGAGCAGGCGACCCTGGAAGGGCGCAACAACCTCGCCAAC GACGTGTTCTTCACCTGGCTCAACACGCCCGAGGCGGTTGCGGCGTTCTGGAAGGCACAAACCCCTGCAATGCAGCAGCGCATTGAAGGCTATGTGGCCG GCTACAACCGTTACCTCAAGGAGCGTACCGCCCAAGGCTTGCCGGCGCAGTGCCAGGCCGCATGGGTACGGCCCATCACGCCGCAAGACCTGGTCAAGCT GACCCGTCGTTTGCTGGTGGAAGGCGGCGTCGGGCAGTTTGCCGAGGCCTTGGTGGGCGCCGCGCCGCCGAATGCTGTCGCTCAAAGGGATGCCAAGGCA TTTGAGGTCGCCGCTGCCAACCAGCAGCGTTTCGCCCTGGACCGTGGCAGCAACGCCGTTGCAGTGGGCCGCGACCGATCATTCAACGGCCGTGGCATGT TGCTGGCCAATCCGCATTTTCCGTGGGTTGGTGGCATGCGTTTCTACGAGATGCACCTGACCATTCCCGGCCAACTGGATGTGATGGGCGCCGCCTTGCC GGGCCTGCCGGTGATCAACATCGGCTTCAACCAGCACGTGGCCTGGACCCATACGGTTGATACCTCCAAACACTTCACCCTGTACCGCCTGACCCTGGAC CCGAAGGACCCGACCCGTTATCTGCTGGACGGCAAATCCGTGCCCATGGATAAAACCAACCTCAAGGTGACGGTGAAAGCCGCCGACGGCAGTACCCGGG AAGAGTCGCGCACCGTCTACAGCTCGCAATTCGGCCCGATGGTGCAATGGCCGGGCAAGCTGGACTGGGATAAAAAATATGCCTTCAGCCTGCGGGACGC CAACCTGGGCAACGACCGGGTGCTGCAACAGTGGTACGCGATGAACCGCGCCGCGAACCTCAAGGAACTGCAAACCTCGGTGCACACCCTGCAAGGTATC CCGTGGGTCAACACCCTGGCGGCGGACGACCAGGGTCAGAGCCTGTACATGAACCTGTCGGTGGTGCCCAACGTCAGCGCGCAAAAACTCGCGCAGTGCA GCGACCCGCGCGTGGGGCTGCAGTTCATCATGCTCGACGGCTCCCGCAGCGCCTGCGCCTGGGACGTGGACCCGCGTGCCGCCCAGGCCGGGATCTTCCC GGCCGATCAGCAGCCGCAACTTGAGCGCACCGACTACGTGCAGCACTCCAACGACTCGGCATGGATGGTCAACCCCAAGGCCCCGTTGACCGGCTTCTCG CCGGTGATCAGCCAGGAGAACATCGGCCTGGGCCCACGTGCCCGTTTCGCCTTGCAACGCTTGCAGGAACTCGACAAGCAGCCGATCAAGGTCGTCGACT TGCAGAACATGGTCATGGACAACCAGGTGTACCTCGCGAGCCAGGTCATGCCGGACTTGCTGAAATTCTGCGCGGGTGCCGATGCCAGCGTGAAGTCGGT GTGCGACAGCCTGAAAAACTGGGACCAGCGCGCCAACCTAGACAGCGGCCTGGGCCTGGTGCACTTCATCAACCTGGCAGAGCAACTGGCGCAAGCGCCC GACGCGTGGAAGGTCGGCTTCGACCCGGCACACCCCTTGACCACACCGCGTGGGCTGGCCATTGAACGGGCAGGGGTGGCCAAGGCACTGCGCGAGGCGA TGCTGGCGTCCGCCGCCGACGTGGCCAAGCGCGGGCTGACCGCCGACAGCCATTGGGGTGATATCCAGGTCTCGGGACAAACACCGATCCATGGCGGCCC GCAGGAACTGGGCGTGTACAACGCCATGCAAAGCGTGCCCCGGGCGGATGGCAAGCGCGAAGTGGTCAGCGGCAGCAGCTACTTGCAAATCGTCACGTTC GACGAGAAGGGGCCGCAAGCGGTTGGCGTACTGGCGTTCTCCTTGTCCAGCGACCCGGCGTCGAAATACTTCAAGGACCAGACCCTGGCGTTCTCCGAGA AAAAACTCGGGCCACTGCCGTTTACCGAACAGCAGATCAAGGCTGATCCGCTGTACCAATTGCAGGTTGTCCGTGACAAGGAAGAAGCCGGACGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGGCCACCGGCAATGGCCGCCCCTTGAGAGAATATTTTTTGAAATCAAGGGGTTGCAAGCCCTGGCAAATGAGTACATAATTGCGCCCATCGAACGC ACTGAAGCATTAAAAACTTCAATGTTTTCAATGAGATAGAGTAGAGGCAAGCTTCACATAGCCCACTCAAGTTTGTATGCGGTGAATGTCGGTTGTAAGG CATTGATCGTTTGAGGCCGAGTAGCAAAATGGTTATGCAGCGGATTGCAAATCCGCCTACGCCGGTTCGATTCCGACCTCGGCCTCCACTCTTAAAACCC CGTAGATCAATGATCTACGGGGTTTTTTATTGCCTGCGATTTATGATCCGTTCCGCAACTTTTGACATGTGTTCCGCAACCTCGATTCAAACGGGGCTCA AAATCAACGGCTCTGGTGCCAAGGGCTCTATACATCAGTACAGAAAATCAGCGATAGTCTGCATCCAGGCTTGCAAATTCCACTGACCAGCCGCCAATCC
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| Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MIITNGLFRVCVAGALLGLSLSATARVQEQQATAEIRRTGFGVPHIRASDERGLGFGIGYAYAQDNLCLLANEVVTVNGERARYFGPEQATLEGRNNLAN DVFFTWLNTPEAVAAFWKAQTPAMQQRIEGYVAGYNRYLKERTAQGLPAQCQAAWVRPITPQDLVKLTRRLLVEGGVGQFAEALVGAAPPNAVAQRDAKA FEVAAANQQRFALDRGSNAVAVGRDRSFNGRGMLLANPHFPWVGGMRFYEMHLTIPGQLDVMGAALPGLPVINIGFNQHVAWTHTVDTSKHFTLYRLTLD PKDPTRYLLDGKSVPMDKTNLKVTVKAADGSTREESRTVYSSQFGPMVQWPGKLDWDKKYAFSLRDANLGNDRVLQQWYAMNRAANLKELQTSVHTLQGI PWVNTLAADDQGQSLYMNLSVVPNVSAQKLAQCSDPRVGLQFIMLDGSRSACAWDVDPRAAQAGIFPADQQPQLERTDYVQHSNDSAWMVNPKAPLTGFS PVISQENIGLGPRARFALQRLQELDKQPIKVVDLQNMVMDNQVYLASQVMPDLLKFCAGADASVKSVCDSLKNWDQRANLDSGLGLVHFINLAEQLAQAP DAWKVGFDPAHPLTTPRGLAIERAGVAKALREAMLASAADVAKRGLTADSHWGDIQVSGQTPIHGGPQELGVYNAMQSVPRADGKREVVSGSSYLQIVTF DEKGPQAVGVLAFSLSSDPASKYFKDQTLAFSEKKLGPLPFTEQQIKADPLYQLQVVRDKEEAGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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