Pseudomonas sp. PAMC 25886, MUM_RS0130535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004566, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACGGTTTCCCACGCACCATTCCCCAGGCTGAAGCCCTGGTGAAGGCTGGCGTCGAGCTGGACAACGTGGTGGAAATCGCTGTTGAAGACGAAGAAATC GTGCAGCGTATTGCCGGTCGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCGAAAGTGGCCGGCAAAGACGATATCACCG GCGAAGACCTGGTGCAGCGTAAGGACGACACCGAAGAAACCGTGCGTCATCGCCTGTCGGTCTACCATTCCCAGACCAAGCCACTGGTGGACTTCTACCA GAAGCTGGCCGATGCCCAGGGCAAACCGAAGTACAGCCACATCGAAGGCGTTGGCTCGGTCGAGTCCATCACCGGCAAGGTACTGCAAGCGTTGAGCTGA TGCTCAACTCGCGAGCAAGCTTGCTCCTACACAACGGCCCGCTTGCGGGCCGTTGTTGTTTATACTGGCGCACTTTTTTTCAACGTGGATGCATACACCA
|
|
| DNA Sequence for Gene |
>MUM_RS0130535
ATGAGCACCTTGCTGGCCCTGGACACCGCGACTGAAGCTTGCTCCGTTGCCCTGCTGCACGATGGCAAGGTCACGAGCCACTACGAGGTGATCCCGCGCC TGCACGCGCAGAAGCTGTTGCCGATGATCAAGCAACTGCTGCTGGAGGCGGGCACTACCTTGTCGGCGGTGGACGCCATTGCATTCGGCCGTGGCCCGGG CGCCTTTACCGGTGTGCGTATCGCCATCGGGGTGGTCCAGGGCCTGGCGTTTGCGCTGGAGCGTCCGGTGTTGCCGGTGTCCAACCTGGCGGTGTTGGCG CAGCGGGCGTTTCGCGAGCACGGCGCCAGCCAGGTGGCAGCGGCCATCGATGCGCGCATGGACGAAGTGTATTGGGGCTGCTACCGCGAAACCGCTGGCG AGATGCGTTTGATCGGCGCTGAAGCCGTACTGCCGCCAGAAGCGGCCGCCTTGCCGGCTGATGCCAGCGGCGACTGGTTCGGTGCTGGCACCGGCTGGGG TTACGGCGAACGCGTTGACGTGACGCTTGCCGGCCAGGATGCCGGGATGCTGCCCCATGCCGAAGACTTGCTGACCCTGGCACGTTTTGCCTGGGAGCGG GGCGACGCCATTCCCGCCGACCAGGCCGCCCCTGTGTACCTGCGCGATAAAGTGGCGCAGACCAAAGCCGAACGCGGGATTATTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGTCAAAAGTGCGGGCAAATTCAGCTGAAAATCACCAATCGTCAGAATTTGCCCCTGCTTTTAAACCTTTTTCAAATTATGTGTTCTAGTTATCACCAGA GCATTTGCGCGCCTTGAGAAGCGCCATTAAAATGCCATCACCGATACCGAGTTCGCATGCATGCGTATAGACGGCTTTTCATCACAGTCCTACCCCCTCA AGCGTAAGCCTCGCAAGGCGAACGTGACGGTAGACGACTCCGTCGAAGACTCCCCCGACTTTGTTGAAATCCAGTCCGACTCAACGGCGGTTTCAGCTCG TTCCCAAGGCTCCAGCGGCGAACGTATCAGCGGTGTACCGGCCCGCCAGCAAGACATGGTCTTCCCCCGCTCCATGAGCAAAAACGTCGCCACGGCCCTG GCCAGCTACCTGACCACCGCCGGCTTTGTCGAATGGGATATGGAAGTGCTGGGTCTCGATATCCATATCTGATGCAGTTGCCTTACTACCTCGGTTGCCC
|
|
| Amino Acid Sequence |
>putative glycoprotease family protein
MSTLLALDTATEACSVALLHDGKVTSHYEVIPRLHAQKLLPMIKQLLLEAGTTLSAVDAIAFGRGPGAFTGVRIAIGVVQGLAFALERPVLPVSNLAVLA QRAFREHGASQVAAAIDARMDEVYWGCYRETAGEMRLIGAEAVLPPEAAALPADASGDWFGAGTGWGYGERVDVTLAGQDAGMLPHAEDLLTLARFAWER GDAIPADQAAPVYLRDKVAQTKAERGII
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|