Pseudomonas sp. PAMC 25886, MUM_RS0130495
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004566, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCCGCCTCGAAAAAGATCTGCGACAACTTCGGATCCTGACTCCCGGAAGTCATCATCAACCGATGCAGGTTCACCGACTCCTCGCTATTGATCAGCACA TGAAACCCACGCGCGATATTGAGCAGCACCTTCTCCACCGGCACGCCCACCGGCAACTCGAAATACATCACCGGTAACTGCTCTTCGCACTTGGCAACCA CCGCCGCCGAAAACAGCGTCTCCTTGTCGGTGAAATGGCTGTACACGGTCAGTTTCGACACGCCGGCCTCCACGGCCACCGCATCCATGCTGGTGCTGGC ATACCCATTACTCAAAAACAGGATTTTCGCCGCATCGAGGATCGCCTGGCGTTTTGCCATGTCCTTGGGACGCCCGGGGCTATTGGTGTTTACAGGATTG TCGGACATTTTCACTTTATTACTGGACTGGTGAGTTTGGTATTAATAACATACTGGCCAGTATAATTATTCCTAGCACCATTAGCGAAAGGTCCTTCAGC
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| DNA Sequence for Gene |
>MUM_RS0130495
ATGCGCAGCTATTTCCTGCCACTCGCGTTGCCTGCCAGCTTGCTATTCCTGTTGGCTGCCTGTGGCCATGAAGAAGCGGCGCAAACCACCGTCCGCCCGG CCATGGTGGTCCAGCCAGAGCCTTCGGCGCAGGCTTCAGACAGCTACCCAGGTGAGGTGCGTGCCCGTTATGAGCCCGACCTGGCCTTTCGCATCGGTGG CAAAGTCAGCCGACGGCTGGTCGAGGAGGGCGAGCGCGTCAAGGCCAACCAACCCCTGGCAGAACTCGATCCCCAGGACGTGCGCCTGCAACTGGAAGCT ACCCGTGCCCAGGTCGCTGCCGCCGAAGCCAACCTGAGCCTGGTGCGCGCCGAGCGTGATCGCTACAAGACCCTGATGGACCGTCAGATGGTCAGCCGTT CCCAGTACGACAATTCCGAAAATCTCTACCGTTCCGGTGAAGCCCGCCTCAAGCAGATCAAGGCCGAATTCGACGTGGCCAATAACCAGGCCGGCTACGC CGTGCTGCGCGCGCCTCAGGATGGCGTGGTCGCCAAGCGTGCGGTGGAAGTGGGCCAGGTGGTGTCGGCCGGCCAGACCGTATTCACCCTGGCCACCGAC GGCGAGCGGGAGGTGCTGATCAGCCTGCCGGAGCAAAGCTTCGGGCGCTTCAAGATTGGCCAGCCGGTGTCCGTGGAACTGTGGAGCCAGCCCGACCAGC GCTTTAACGGCCGCATCCGCGAGCTGTCGCCCGCCGCCGATCCAAAGTCACGGACCTTTGCCGCCCGGGTCGCCTTCACCGGCGGCAAGGTGCCGGCGGA GCTGGGGCAGAGCGCTCGCGTATTCATACAGGCTGACGGCGTGATTCCCCTGGCGGTGCCGCTGTCTGCCCTGAGCGCGGAGAACGGTGCGTCCTACGTC TGGGTGGTCCAGCCCGACAACACCCTCAAGCGCACACCGGTGCGGATCGGTGCCTTTGGCGAGAAAACCGTGCCGGTGCTGGAAGGCTTGAACCCCACCG ACTGGGTGATTGCGGCCGGCGTGCATGTACTCCATGAGGGCCAGCAAGTGCGCCCGGTGGATCGCGCCAATCGAGTGGTAAGCCTGGCGGCCAAGGAGTA G
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCCGATGGGTTTCAATCTTTCCGAATGGGCGTTGCGTAATCGCCAGATCGTACTGTTCCTGATGATCCTGCTGGCAGTGGTAGGTGCCTTGTCCTACA CCAAGCTGGGACAAAGCGAAGACCCGCCGTTCACCTTCAAGGCCATGGTGATCAAGACCAACTGGCCGGGTGCTACTGCCCAGGAAGTCTCGCGCCAGGT CACCGAGCGTATTGAAAAGAAACTGATGGAGACCGGTGACTACGAGCGCATCGTGTCCTTCTCGCGTCCCGGCGAATCCCAGGTCACCTTCATGGCCCGG GACTCCATGCATTCCGCGCAGATCCCGGACCTCTGGTACCAGGTGCGCAAGAAGATCAGTGATATTCGCCAGACCTTGCCGCCGGATATCCAGGGCCCGT TTTTCAACGATGAATTCGGCACCACCTTCGGCAATATCTACGCGCTGACCGGCGATGGCTTTGACTACGCTGTGCTCAAGGACTACGCCGACCGCATCCA
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| Amino Acid Sequence |
>RND transporter
MRSYFLPLALPASLLFLLAACGHEEAAQTTVRPAMVVQPEPSAQASDSYPGEVRARYEPDLAFRIGGKVSRRLVEEGERVKANQPLAELDPQDVRLQLEA TRAQVAAAEANLSLVRAERDRYKTLMDRQMVSRSQYDNSENLYRSGEARLKQIKAEFDVANNQAGYAVLRAPQDGVVAKRAVEVGQVVSAGQTVFTLATD GEREVLISLPEQSFGRFKIGQPVSVELWSQPDQRFNGRIRELSPAADPKSRTFAARVAFTGGKVPAELGQSARVFIQADGVIPLAVPLSALSAENGASYV WVVQPDNTLKRTPVRIGAFGEKTVPVLEGLNPTDWVIAAGVHVLHEGQQVRPVDRANRVVSLAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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