Pseudomonas sp. PAMC 26793, D109_RS0121370 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039316, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCTACCGTGAACTGGCGCGTGGGGTGCATCCGGACCGATTTGCTGACGCTTCCGAGCGTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAA TGAAGCCTATCAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGGCGGTCGCGAGCTGCCGCTTGAGGTCACGGTCCAGGACCCT GATTTCCTGATGCAGCAGATGCAATGGCGCGAGGAGCTCGAAGAGCTGCAGGACGAGGCCGATCTGGCCGGCGTCGCGGTCTTCAAGCGCCGTCTGAAAA TGGCCCAGGATGAACTCAACGAAAGCTTCGCAGCCTGTTGGGATGATGCAGCGCAACGTGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGA CAAGCTCACCTACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGCCCAGGTTGCACGCCTGATATACAGATAAGTCCTGATTACC
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| DNA Sequence for Gene |
>D109_RS0121370
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGTCGTCTGGCGGTCGGGATTGACTTGGGCACTACCAATTCGCTGGTCG CTGCATTGCGCAGCGGTCTTTCCGAGCCGCTGCCTGACGCGGATGGCCAGGTCATCCTGCCGTCTGCCGTGCGCTATCACGCTGACCGCACTGAAGTGGG CGAGTCGGCCAAGCTGGCAGCGTCTACCGATCCTTTGAACACCGTGCTGTCGGTCAAGCGCTTGATGGGTCGTGGTCTGTCCGACGTCAAGCAGCTGGGT GACCAACTGCCTTACCGCTTCGTTGGCGGTGAATCCCATATGCCGTTCATCGACACCATCCAGGGCCCGAAAAGCCCGGTGGAAGTGTCGGCCGATATCC TCAAGGTGCTGCGCCAGCGTGCGGAAACCACCTTGGGTGGCGAACTGGTGGGGGCGGTGATTACTGTTCCTGCGTACTTCGATGACGCTCAGCGCCAAGC CACCAAGGATGCGGCGAAGCTCGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAGCCGACTGCGGCCGCTGTGGCTTACGGCCTGGACCAGCACGCCGAA GGCCTGGTGGCTATTTACGACCTGGGCGGCGGTACCTTTGATATTTCGATCCTGCGCCTGACCGGCGGTGTCTTCGAAGTGCTGGCTACCGGTGGCGATA CGGCCCTGGGCGGCGATGACTTCGATCACGCCATCGCGGGCTGGATCATCACCAGCGCCGGCTTGTCTGCCGACCTGGATCCGGGCGCTCAACGTAATCT GCTGCAAACCGCCTGTGCCGCCAAAGAAGCGCTGACTGAGGCTGCGTCGGTGGAAGTTTCCTACGGTAGCTGGTCGGCCCAACTGACCCGTGAAGCGTTC GATTCCTTGATCGAGCCGATGGTCGCCCGCAGCCTGAAAGCCTGCCGCCGAGCCGTACGTGACTCAGGTGTCGAGTTGGAAGACGTGGCTGCCGTGGTCA TGGTGGGCGGTTCGACCCGCGTGCCACGTGTTCGTGAGGCGGTCGCTGAAGCCTTCGGTCGCCAGCCGCTGACTGAAATCGACCCGGATCAAGTGGTGGC CATTGGTGCCGCGATCCAGGCCGACACCCTCGCCGGTAACAAGCGCGATGGTGGCGAACTGCTTCTGCTTGACGTGATTCCGTTGTCCCTGGGGCTGGAA ACCATGGGCGGCCTGATGGAGAAGGTGATTCCACGCAACACCACCATCCCCGTTGCCCGTGCCCAGGACTTCACGACGTACAAAGATGGCCAGACGGCCA TGATGATTCATGTGCTGCAAGGTGAGCGTGAACTGATCAGCGACTGCCGTTCCCTGGCTCGCTTCGAGTTGCGCGGGATTCCGGCGATGGTGGCCGGTGC GGCGAAGATTCGCGTGACCTTCCAGGTCGACGCCGACGGCTTGCTCAGCGTCGCCGCCCGCGAACTGGCCTCCGGCGTTGAAGCCAGCATCCAGGTCAAG CCGTCCTACGGCCTGACCGACGGCGAAATCGCCAAGATGCTCAAGGATTCGTTCCAGTACGCCGGTGACGACAAGGTCGCCCGCGTGTTGCGAGAGCAGC AAGTCGACGCCCAGCGCCTGCTCGAAGCGGTGCAGGGCGCCCTTGAGGCTGACGGCGAGCGCCTGCTGGATGCCGAAGAGCGCATGGTTATCGACCTGCA GATGCAGGAGCTGGCTGAATTGATGAAAGGCACCGATGGTTACGCCATCGAGCAGCAGACCAAGCGTCTGTCGCAAGTGACGGATGCCTTTGCCGCCCGT CGTATGGACCAGTCGGTGAAAGCCGCCCTGGCGGGCCGCAACTTGAACGAACTTGAGGATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATGCCGCAGATCATTTTTCTGCCACACGCCGAGCATTGCCCGGACGGTATGGTCGTGGAGGCTGAGACCGGCAAGTCCATTCTCGAAGTCGCTCACG ACAACCACATCGAGATCGAAAGCGCCTGCGGCGGCGTTAACGCCTGTACCACGTGCCATTGCATCATTCGCGAAGGTTTCAATAGCCTCGAAGAGGCTGA TGAGCTGGAAGAGGACTATCTTGATAGGGCGTGGGGTCTGGAGCCGACATCGCGCTTGAGCTGCCAGGCAAAAGTGGGCACAGAAGACCTCACTGTTGAA ATTCCGAAATATTCGCTTAACCATGCCGCCGAAGCGCCGCACTGACTGGTAGAACTGTCATGAGTTACGGTTGGAATGATGTACAACGCATTGCTGAAGA ACTGGCTGAATCCAAGCCCGATGTGAGCCCGCTCACTGTCAACTTCGTCGACCTGCAGCGATGGATCATGGAGCTTCCGGATTTCGACAATACCTCTGGC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLPDADGQVILPSAVRYHADRTEVGESAKLAASTDPLNTVLSVKRLMGRGLSDVKQLG DQLPYRFVGGESHMPFIDTIQGPKSPVEVSADILKVLRQRAETTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDTALGGDDFDHAIAGWIITSAGLSADLDPGAQRNLLQTACAAKEALTEAASVEVSYGSWSAQLTREAF DSLIEPMVARSLKACRRAVRDSGVELEDVAAVVMVGGSTRVPRVREAVAEAFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPAMVAGAAKIRVTFQVDADGLLSVAARELASGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLLEAVQGALEADGERLLDAEERMVIDLQMQELAELMKGTDGYAIEQQTKRLSQVTDAFAAR RMDQSVKAALAGRNLNELED
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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