Pseudomonas stutzeri B1SMN1, B382_15368
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas stutzeri B1SMN1 contig00010, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCCAGCTTGGCGGCGCAGACCGCTTGCGATGCCGATCTCCGACCGCGCAGCGGAAAATTCTGGGTTGCGTTCATACGCAAGGGACACGGCCCGCTCCAG TGTCAGACCGTCTTGCGCGCCCACCTCGAGCGACATTAGTGCCAGCCCGAGCCCAAGCAGCCCGCTAGCAAGCAGATACAAGCGTTTCTTTTGATACATA CGCAACACTGCAGTGCAGTGCCCCCTTCGTCGATAGCGTTTCCTCAGCCGCACTAAACCGGCCAGATAGCTGATGGCTAAGCGGCGTGACTTTAGATAAG CGCGGATATCGGCCGGGTGACTACGACATTACAAATTTGTAATCCAAGGAATATCTGCGATTGCACCGCTCAAGATTACGAGATCGTCATTTACCGCTAA TCCTGCGGTCATTTACAGGGGAAGATCATCGCCCGGCACTCGAACAAAAAGGCGAAGGCGTCATTCGAGCGCTGACATGCCGTATATCAGGAGCATCATC
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| DNA Sequence for Gene |
>B382_15368
ATGAGCAAAAAGGCCGCCCTTTCACTTACAGCCCTTTCACTGGCACTGGGCAGCGCCCCGGTCTTTGCCCAATCGGAAACAGCGGAGGGCTTCATCGAAG GCAGCACGCTTTCGCTGATAAATCGCAACTTTTATTTCAACCGAGATTTTCGCGACGGTGGGAGCGCCACCGGCAATGGCTATTCTGAGGAATGGGCTCA CGGACTGATGGCATTCTTTGAGTCCGGATATACCCAAGGCTCGGTGGGGATCGGCGTCGACGCCTTCGCCATGCTCGGCCTCAAACTCGATTCTGGATCA GGACGTTCCGGTGCTGGCGGAACCGTCGATCTTCTCCCCTACAATAGCGCCGGCGATGCCGAGGATGACTTTTCTCGAGTAGGGGGGGCCGTGAAAGCAC GGTTCTTGGGCACCGAGATCAAGGCAGGCGATGTATTTCCCGCTACTCCTGTCGTGCACTTTGGTGACGCACGGCTGCTGCCGGAGTCTTTCAAGGGTGT CACCGTTGTGAACAACTCGCTGGACGACCTCACCCTCCAGGGCGGCCGCCTGCACGCGATGAGCCAGCCCAATACCAGCAACACGAACGATGACTTCGTC ACGTTTTATGGCGGCGGCGTCGACTCGCCTTGGCTCGGCTACGCAGGCGGCGACTATAGCGTGAACGAAAACCTCAGTCTTAGCCTGTATACCAGCCGGC TGAAGGATGCCTGGGATCAACATTATTTCGGTGTCTCGGCCACCTATCCACTTTCCGATGCCGTCGTGCTGCTGGGCAGCTTCAACTACTACAAGGCAAC CGACGAAGGTCGGAAATTGCTGGGCGAGTTTAACAACAGCATCTGGAGTTCCAGTCTGGGTGTCGCCTTCGGCGCGCACACCGTCACGGCGTCGTATCAG CGAAACAACGGTAACAACGACTTTGACTACTTGCGCCAAGCGGACTCGATCTACCTGAATAACTCCATCCAGTACAGTGATTTCAACTCACCTAAAGAGC AGTCCTGGATGCTGCGTTATGACCTGAACATGGCGGGTTACGGCATACCTGGGCTTACGTTCATGACTCGCTACGCCCGCGGCTGGGGCGCCGATTACAG CAACGCAAATGAGGTATATATGCGCCAAGACGATAACGGCGCGCCTCTGTCCGGACAGAAGCGCTGGGAACGCGACGTCGAAGCACGCTACGTTGTACAG ACAGGCTCGTTCAAGGACCTCTCTCTGCGGGTGCGCCAGGCTACAACACGGGCGACTGCTTTCGAGTCCGACCTCAATGAGGTTCGATTCATCGCCGAGT ACCCGCTCTCGATCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCACCACGGGCAACACCACATCTTCGTTTTTTGCTCCCTTGGTTTGAAGATGTGTTTCAGGCGCCCATAGGGGCGCCTTTTTTTGCTTGAGTGAGCCTC CTTGCGCTGCCAGTCAACCAAATGACCAGTAGATTACAAATCTGCAAGATGGCCCTGCAGGTCTTTTACGGCGCTAGAGTGCTTCGCGCTTCCCTAGGCA GATCTTCGCTTCTGTCTTTCACGCTAGGGCCAGGTCGCTTTTGTCTTGACCTTATAGTTACTACATAGATTATTTTTGGTTCCGTTTAACCGGCACCCTA CCTCCTTGCCGAGCTACCTGAAAACATGCGCATCCTGGTTGTAGAAGACGAAAACAAAGCTGCGGACTACCTGCAGCAGGGCCTTATCGAATGTGGTTAC ACGGTTGATCGAGCGGATGATGGGCTCGATGGATTTCACCTGGCACTGCAGAACGACTATGACATCGTGCTACTGGATGTAAATCTGCCAACCATGGATG
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| Amino Acid Sequence |
>porin
MSKKAALSLTALSLALGSAPVFAQSETAEGFIEGSTLSLINRNFYFNRDFRDGGSATGNGYSEEWAHGLMAFFESGYTQGSVGIGVDAFAMLGLKLDSGS GRSGAGGTVDLLPYNSAGDAEDDFSRVGGAVKARFLGTEIKAGDVFPATPVVHFGDARLLPESFKGVTVVNNSLDDLTLQGGRLHAMSQPNTSNTNDDFV TFYGGGVDSPWLGYAGGDYSVNENLSLSLYTSRLKDAWDQHYFGVSATYPLSDAVVLLGSFNYYKATDEGRKLLGEFNNSIWSSSLGVAFGAHTVTASYQ RNNGNNDFDYLRQADSIYLNNSIQYSDFNSPKEQSWMLRYDLNMAGYGIPGLTFMTRYARGWGADYSNANEVYMRQDDNGAPLSGQKRWERDVEARYVVQ TGSFKDLSLRVRQATTRATAFESDLNEVRFIAEYPLSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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