Pseudomonas aeruginosa HB15, PA15_0329500 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa HB15 contig000020, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTAATCGCCGTGGTCACGCTGCTCCGGCGCAAGCGGGGCGGACGGCGCGAACCTTGCAGCGAAGCCTTCCTGACAATCCGACAGGGAGAACCATGGTGA ACGGAGAAAACAAGATCGTCCTGGTCCTCGAAGAACACGCCGACCAGCTCTGGCGGATCGAGGAATTCCTCCTCGATCGAGGCTACGCGGTGCTCAGCGC GGCGAGTCGCGACGAAGCCCTCGACCACCTGGCCTCGGACGCGGTGATCGACCTGTTCCTGCTCAGCGAGCAGCTCGAAGGTCCTCTGAGCGGCAGCATG CTCATCGAAACCAGCCTGCCGGTGCGCCCGCGGATGCGGGTGATCCTGCTCAGCGACAGCGCTCGCGTCGGCATCGACCCGGCGGCACCCTATCCGGTGC TGCTCAAACCGGTGACCCTGGAGGAACTGGGGAAAGCCATCGACCTGGTCCTGCACAGCGCGCCGGTCTGCCCCGGCGTCTGACCACCGAGGAGCCCACC
|
|
| DNA Sequence for Gene |
>PA15_0329500
|ligD
ATGCCCAGCAGCAAGCCGCTCGCCGAGTACGCCCGCAAGCGCGATTTCCGCCAGACCCCGGAGCCCAGCGGCCGCAAGCCTCGCAAGGACAGCACCGGGC TGCTCCGCTATTGCGTCCAGAAGCACGACGCCAGCCGCCTGCACTACGACTTCCGCCTGGAGCTGGATGGCACCCTGAAGAGCTGGGCGGTGCCCAAGGG GCCGTGCCTCGACCCGGCGGTGAAGCGGCTCGCGGTGCAGGTTGAGGACCATCCGCTGGACTATGCCGATTTCGAAGGCAGCATCCCCCAGGGGCACTAC GGCGCCGGCGATGTCATCGTCTGGGACCGAGGCGCCTGGACGCCTCTGGACGATCCGCGCGAGGGCCTGGAAAAGGGCCATCTCAGCTTCGCCCTGGATG GCGAGAAACTCTCCGGGCGTTGGCACCTGATCCGCACCAACCTGCGCGGCAAGCAGCCCCAGTGGTTCCTGGTCAAGGCCAAGGACGGCGAGGCGCGCAG CCTGGATTGCTTCGACGTGCTGAAGGAGCGTCCCGACAGCGTGCTCAGCGAGCGTACGCTGCTGCCCCGCCATGGCGAAGCCGCCACGCCCGCGGCCAGG CCGGCGCGACGCGGCAAGAGCGGGGGGAAGACGCCGATGCCCGAATGGATCGCCCCCGAGCTGGCCAGCCTGGTCGAGCAGCCTCCGCGAGGGGAGTGGG CCTACGAACTCAAGCTGGACGGCTATCGGCTGATGAGCCGCATCGAAGACGGCCACGTGCGCCTGCTGACCCGCAACGGCCATGACTGGACCGAACGCCT GCCGCACCTGGAGAAGGCCTTGGCCGGGCTCGGTCTGCAGCGCAGTTGGCTGGACGGCGAACTGGTGGTCCTCGACGAGAAGGGTCGACCGGACTTCCAG GCCCTGCAGAACGCCTTCGAGGAAGGTCGCGGCGAGAACATCCTGTACGTCCTCTTCGACCTGCCGTACCACGAAGGCGAGGATCTGCGCGATGTCGCCC TGGAGGAGCGCCGCGCGCGCCTGGAGGCGCTGCTGGAAGGGCGCGACGAAGACCCGCTGCGGTTCTCCGCGACGCTCGCGGAAGACCCCCGCGACCTGCT GGCCAGCGCCTGCAAGCTCGGTCTCGAAGGCGTGATCGGCAAGCGTCTGGGTAGCGCCTACCGTTCGCGCCGCAGCAACGACTGGATCAAGCTGAAGTGC CAGTTGCGCCAGGAGTTCGTGATCGTCGGCTATACCGAGCCGAAGGGCTCTCGCCGGCATATCGGCGCCTTGCTGCTCGGCCTCTACAGCCCTGACGAGG AGCGCCGGCTGCGCTATGCCGGCAAGGTCGGCAGCGGCTTCACCGCGGCCAGCCTGAAGAAGGTCCGTGAGCGCCTGGAACCCCTCGCGGTCCGTTCCAG CCCATTGGCGAAGGTGCCGCCGGCGCGCGAGACCGGGTCGGTGCAGTGGGTGCGCCCGCAACAGCTGTGCGAGGTTTCCTATGCGCAGATGACCCGTGGC GGGATCATCCGCCAGGCAGTGTTCCACGGCTTGCGCGAAGACAAGCCGGCGCGTGAGGTGACCGGCGAGCGTCCCGCCGGTGCGTCGCGGGCGGCCACCG CCGGCGTGCGCATCAGCCATCCGCAGCGGCTGATCGACCCGTCGATCCAGGCCAGCAAGCTGGAACTCGCCGAGTTCCATGCGCGCTACGCCGACCTGCT CCTGCGCGACCTGCGCGAGCGCCCGGTGTCGCTGGTGCGCGGCCCCGACGGAATCGGCGGCGAACTGTTCTTCCAGAAGCACGCGGCGCGCCTGAAGATC CCCGGCATCGTCCAGCTCGACCCGGCGCTCGATCCCGGTCATCCGCCGCTGTTGCAGATCCGCAGCGCCGAGGCGCTGGTCGGCGCGGTGCAGATGGGCA GCATCGAATTCCATACCTGGAACGCCAGCCTGGCCAACCTGGAGCGGCCCGACCGTTTCGTCCTCGACCTCGACCCGGACCCGGCGCTGCCGTGGAAGCG CATGCTCGAAGCGACCCAGCTGAGCCTGACGTTGCTCGACGAGCTGGGCCTGCGCGCCTTCCTCAAGACCAGCGGCGGCAAGGGCATGCACCTGCTGGTG CCGCTGGAGCGCCGGCATGGCTGGGACGAGGTCAAGGATTTCGCCCAGGCCATCTCCCAGCACTTGGCGCGCCTGATGCCGGAGCGTTTCTCGGCGGTTT CCGGGCCGCGCAACCGGGTCGGCAAGATCTTCGTCGACTACCTGCGCAACAGCCGCGGCGCCAGCACCGTGGCCGCCTACTCGGTGCGCGCCCGCGAAGG GTTGCCGGTGTCGGTACCGGTGTTCCGCGAGGAACTCGACTCGCTGCAGGGCGCCAACCAATGGAACCTGCGCAGTCTGCCGCAGCGCCTCGACGAACTC GCCGGCGACGATCCCTGGGCCGACTACGCCGGCACCCGCCAGCGCATCAGCGCGGCCATGCGGCGCCGGCTCGGGCGCGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGTCCGCGAAAAAGGCGGAACTCCCCCGGCGCACAGGGCCTCCACCGTGCAACGAGATGCCGAGGAGGCCCCCGATGGATACCGCCTATCTGATCCTCG CGCTGCTGGTCCTGTTGCTCCTGGTGGATGCCTGGGCCATCAACAGCGTGCTCCGCAGCGACAGCTCCGCCAGTCGCAAGCTCGGCTGGTCGCTGCTGAT CCTGCTCCTGCCCGTGCTCGGCCTGGTCCTCTGGGGCTGGACCGGCCCCCGTGGCTTGCGCCCGGTGACCTCACCGGAACACAGCAAGTGAACCCCACTG GAGACTGCCCATGAACAGCGAAACCTGTGCCTGTCCCAAATGCACCTGCCAGCCCGGTGCCGATGCCGTCGAACGCGACGGCCAGCACTATTGCTGCGCG GCCTGCGCCAGCGGCCACCCCCAGGGCGAGCCGTGTCGCGACGCCGATTGCCCCTGTGGCGGCACCACCCGGCCCCAGGTGGCGGAAGATCGCCAGCTGG
|
|
| Amino Acid Sequence |
>ATP-dependent DNA ligase
MPSSKPLAEYARKRDFRQTPEPSGRKPRKDSTGLLRYCVQKHDASRLHYDFRLELDGTLKSWAVPKGPCLDPAVKRLAVQVEDHPLDYADFEGSIPQGHY GAGDVIVWDRGAWTPLDDPREGLEKGHLSFALDGEKLSGRWHLIRTNLRGKQPQWFLVKAKDGEARSLDCFDVLKERPDSVLSERTLLPRHGEAATPAAR PARRGKSGGKTPMPEWIAPELASLVEQPPRGEWAYELKLDGYRLMSRIEDGHVRLLTRNGHDWTERLPHLEKALAGLGLQRSWLDGELVVLDEKGRPDFQ ALQNAFEEGRGENILYVLFDLPYHEGEDLRDVALEERRARLEALLEGRDEDPLRFSATLAEDPRDLLASACKLGLEGVIGKRLGSAYRSRRSNDWIKLKC QLRQEFVIVGYTEPKGSRRHIGALLLGLYSPDEERRLRYAGKVGSGFTAASLKKVRERLEPLAVRSSPLAKVPPARETGSVQWVRPQQLCEVSYAQMTRG GIIRQAVFHGLREDKPAREVTGERPAGASRAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKI PGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLV PLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDEL AGDDPWADYAGTRQRISAAMRRRLGRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|