Pseudomonas plecoglossicida NB2011, L321_10094
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold70, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGTCTCGACATACCCAAGCTCACGGTCGTGGCCGAAACGCCCCATGGGAGAACTCCCCTCCATCGTATGGGCAGCGGGGAGAACTGGGTAGGCTATCAC CTGGTGACCTACCTGGCGCTGGCCAAATGGTTCATTAAAGAGAATCGCCCTGTTGGCAGGTTCATCTTCTTTGACCAGCCTACCCAAGTGTACTTCCCGT CTGACAAAGTCGTGACGGGCAACATCGACGAGATCGAGAAGGACGAAGATCGCAAAGCGGTCAAGAAAATGTTCGAATGGCTCTTCAAGGTTGTGGAGCA GGAGCTGGGGCCTGATCTGCAGGTCATCGTCACCGACCATGCCGATATTGAGGAGGACTGGTATCAGTCAGCCATCGCCGATGAAAAATGGCGTGGTGAT ATCGCACTCATTCCTAAACATTGGTATACGGAAGAGTAATTTTCAATGCCGATTTGCTATATTCGGCTCTAACATGTGCGTTCTCTAGAGGGTTAAAACA
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| DNA Sequence for Gene |
>L321_10094
GTGTCAAAACTGGTTGAATTTCGCGCCGCTGAACGCGCATTGCAAGAGCAGCTCGCTCAGCTCGAAGCGCTCAAAAACGATGCGGGCCTGAAGAAAGAAA TCGAGTTCGAGTCGAAGCTAAAGGCCCTGATGGAGTCCTATGACAAGGGCCTCAAAGAGATTATCGCTATCCTCGATCCAGCGGCTGCTGGTCACCGGCA GGAGAAGGTGTCCACCACTCAGCGTCGTCCTCGGGCCTTGAAGCGCTACAAGAATCCGCACTCGGGCGAAGTGGTTGAAACCAAAGGTGGCAATCACCGC GTTTTAAAAGAGTGGAAAGCCGAGTACGGCGCTACCAACGTGGAGTCCTGGCTCCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAAACGGAAGCGGCCCTTTGGGGCCGCCTCTTGCCGCCTGACATTAGGGGCGCATCTCCCTTGCTCTCATTACGCGCCGGATGTTTACCAGCGACGC CAAGGCGTGGCGCTGTTCTTCGCCGATCCGGTCGCCACGCGCCGCCGCATTGAACGTTTTGCGGTACAGCGCACGCAGTTCGCCGTCAGGTTTGGCAGCC AGTTCAAAGATCGTCATCAGTTTCATCTCTTATTTCCTCTCATCTTTCGGCCACCCATCGCGGCCTCGTGGCGCTTGCCCCTGCACAGGTGAAGGCCACG ACTGCATCCGTTTCGGGCCGCAACGAAGAGAAGGAGTCATTCATGACTTGCAGTACTGGCGTGACGACGCCTGTGCGAAAGCCCATCGATCAGGCCGCGT GCGGTGTGATGAAAGAAGACGAGGGAGAAATAAGAGGGTCTGTGATGAACGCATCTAAATGGTGACGAAACTCCAGGGCGAACCTGCTGCACTTCGCGCT
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| Amino Acid Sequence |
>hypothetical protein
MSKLVEFRAAERALQEQLAQLEALKNDAGLKKEIEFESKLKALMESYDKGLKEIIAILDPAAAGHRQEKVSTTQRRPRALKRYKNPHSGEVVETKGGNHR VLKEWKAEYGATNVESWLQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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