Pseudomonas plecoglossicida NB2011, L321_06491
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NB2011 genomic scaffold PT1_scaffold60, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGCGTCTGTGGGGCGCATTC TACAGGCCTACGGCTGACCGTCAAGCCTTAGTTATTGATTTGCCTGGATTTAATTCACTGCATTGATTTTCAGGCAAAAGAAAAAGGCCACTGTGTGAAC AGTGGCCTTTTCTCGAATCTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGCCTG TGAGATCGAATTCTACGGATTTACTTCCCTGTGTCAAGCATTTACTTCAAAAAAACTGTTTTCCTTCAAACCCTTAGCGCTTGTACAAGGCCTGCAGCGC AGGCGCGACGGGGCTTTCAGCCCGATTGTCGAGCCAGGCTGTGAGCAATGGGGGTGCATGCGCTACTATCTGTATGAATTTACAGTGCTGACGGTCGTCC
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| DNA Sequence for Gene |
>L321_06491
ATGTCCTTGCGCAAGATCATTCATATCGACTGCGATTGTTTCTACGCCGCCATCGAGATGCGTGACGACCCACGTCTGGCGGGGCGGCCCATGGCTGTCG GCGGTTCGCCCGACCACCGCGGGGTGATTGCCACGTGCAACTATGAAGCGCGCGCCTACGGCGTGCGCTCGGCCATGTCTTCGCGCCATGCGCTCAAGCT TTGCCCTGACCTGCTGATCGTCAAGCCTCGCTTCGAGGCCTATCGCGAAGCCTCGCGCGAGATCCATGCCATTTTCCGTGACTACACCGACCTGATCGAA CCGCTGTCGCTGGACGAGGCGTACCTGGATGTCAGTGACAGCCAGTGGTTCGCCGGCAGCGCTACGCGCATCGCTGAAGATATCCGCAGGCGGGTTGCCC GCACGTTGCACATCACGGTGTCGGCCGGCGTGGCACCCAACAAGTTCCTGGCCAAGATCGCCAGTGACTGGCGCAAGCCCAACGGGCTTTTCGTGATAAC ACCGGACCAGGTCGAGGCGTTTGTAGCCGCCTTGCCCGTGGCCAGGTTGCACGGCGTGGGCAAGGTGACGGCAGACAAGCTCACCCGCCTGGGGATCGAT ACCTGCCTGGACCTGCGGGCCTGGTCCAGGCTGGCGCTGGTGCGTGAGTTCGGCAGTTTTGGCGAGCGGCTATGGGGGCTGGCGAGGGGGGTCGACGAGC GGGCGGTGCACAATGACAGCCGGCGCCAGTCGGTCAGCGTGGAAAATACCTACGACACGGATCTGCCGGACCTTGCCAGTTGCCTGGAACGGTTGCCTGA GCTGCTCGATAGCCTGAACCAGCGGATCACGCGCATGGACGACAGCTACCGGCCGGACAAACCCTTCGTCAAGGTCAAGTTCCATGATTTCAGCCAGACC ACGCTGGAGCAGGCCGGGGCAGGGCGGGACCTGGAAAGTTACCGGCAGTTGTTGCGCCAGGCGTTTGCCCGAGGTGGCAAGCCAGTGCGTTTATTGGGGG TAGGGGTGAGATTGCGCGACTTGCGCGGTGCGCATGAACAGCTGGAGTTGTTCACGGAAAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAAGGGCTGCTTGAAGCAGCCCTTGTTCGGTCATTGCACGCCTGGGTCGGCCACCAGCCGCCCCGTGGACTTGGTCAGTGCCTGCAGAAACTCCTGCTGC AGCTCCGGGTCATTGCGGGTCAGCTCGATCAGGCTCTGCTCCATCTCGCTGGCCTCCTCTTCCAGGCCCAGCTCAGACAGGCGCTTGACCCGGTGCACCC ACTGGCCGACGTCGTCGTCCTCCAGGTCGTCGAAGATCAGTTCGTGGGCTTCTTGCAGCTTGTTGCGCAGAGTGGCGCTGACCAGCAGGCTGGCATCGCC GCGTACCGCGTTTTCCTCATCGGTCACCTGCAAGTGCAAGGTGCCAACGTGGTCGAGGTGCTGCTCCGAGAACGGGCTGTCCAGCAGGTTCAGGCGCAGT ACGCCGGTCCTGTCGGTGGTCAGTTCATGGGACAGTTTGCCAGCCTTCACTTCGACCAGCCGCTCGCTCCACGGCAGGCTGGTGAATTCTTCGCGTTTGT
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| Amino Acid Sequence |
>DNA polymerase IV
MSLRKIIHIDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSRHALKLCPDLLIVKPRFEAYREASREIHAIFRDYTDLIE PLSLDEAYLDVSDSQWFAGSATRIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPDQVEAFVAALPVARLHGVGKVTADKLTRLGID TCLDLRAWSRLALVREFGSFGERLWGLARGVDERAVHNDSRRQSVSVENTYDTDLPDLASCLERLPELLDSLNQRITRMDDSYRPDKPFVKVKFHDFSQT TLEQAGAGRDLESYRQLLRQAFARGGKPVRLLGVGVRLRDLRGAHEQLELFTEK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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