Pseudomonas plecoglossicida NB2011, L321_05177

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas putida NB2011 genomic scaffold PT1_scaffold50, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AACTGCATTTCGCCAACCTGTTCCTCGGCATCGCCGAAGGTGCATTCGACGAGGCGCGCCAGTACACCCTCAAGGAAAGCCGGCCGTGGTTCCGTTCGGG GGCCACCAGCCCCGCCGACGACCCTTACGTGCTGCGCCACTACGGCGAGTTCTGGGTCGGCCTGGAAAGCGTGCGGCTGCTGATCGAACGTGCCGCCCGG CAACTCGACAGTGCCTGGGCCAAGGCACAGGCGCTGAGCGCCGAGGAGCGCGGCGACCTGGCCCTGGCCATCGGCACCGCCAAGGTCGCGGCCACGCGCC ACGGCCTGGACATCTGCAACCGCCTGTTCGAAGTCACCGGCGCCCGCGCCACCCATGCTTCGCTGCGCTTCGACCGCCATTGGCGCAACCTGAGAACGCA AACCCTGCACGACCCGGTGGACTACCGCATCCACGAGCTCGGCGAGTGGGCCCTCAGCGGCCAGCGCCCTGCCCCATCCTTCTATTCCTGAGGATCGCCC
DNA Sequence for Gene
>L321_05177
ATGCAACTGCTGACCCTCCCCCCGTCACCGCAACTGGCTACCTCGATCAGGGCGACCGCACAGGTCTTCGAGGACCCCAGATCGCTGGCGCTTCTCGCCC ACTTGCAGCAGGTCGCCCCCAGCGAGGCCAGCGTCCTGATCATCGGCGAAACCGGCACGGGCAAGGAGCTGGTCGCACGCCACATCCACAACCTCAGCGG CCGGCGCAACGGCCCGTTCGTCGCGGTCAACTGCGGCGCGTTCTCCGAGTCGCTGGTCGAGGCCGAGCTGTTCGGCCATGAAAAAGGCGCCTTCACCGGC GCCCTGGCGGCCAAGGCCGGCTGGTTCGAGGAGGCCAACGGCGGCACGCTGTTCCTCGACGAGATCGGTGACCTGCCGCTGCCGATCCAGGTCAAGCTGC TGCGCGTGTTGCAGGAGCGCGAGGTGGTGCGGCTGGGCTCGCGCAAGAGCATTGCGATCAATGTGCGGGTGCTGGCGGCAACCAACGTGCAGCTGGAAAA AGCCATCAATGCCGGGCATTTTCGCGAAGACCTTTACTACCGACTGAACGTGGTGGCCCTGCAGCTGCACCCGCTGCGCGACCGGCCCGGCGACATCTTG CCGCTGGCCCGGCACTTCATCCGCAGCTACAGCGAGCGCCTGGGCTACGGCCCGGTGGAACTCAGCCCCAAGGCTCAGGCCAAGCTGGTCGAGTACAGCT GGCCGGGCAACATTCGCGAACTGGAGAACGTGATTCATCACAGCCTGCTGACCTGCGGCGATGGGCTGGTGCAGGCGCAGGATCTGCGTCTGTCCCATCT GCGCCTGGAGCGTCAGGAGGCCAGCAACAATGGCGTCGAAGACTTGCTTTTGCAGGCATTCAGCCGGTTGTACGAGGAGCAGCCTGGGGAGTTGTACGAG AAGGTCGAAAATGCGCTGCTGCGCTCGGCCTACCACTTCTGCCATTACAACCAGGTACATACCGCACAGTTGCTAGGGTTGTCGCGCAATGTCACGCGCA CGCGGCTGATTGCCATTGGCGAGTTGGTGGTGAACAAGCGGCGGGTACAGCAGGAGCAGGCGTTTGATGCCAGGGTGGTGCGGTTGTCGATCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCTTGCAGCGTCCGCTGTGGCCTCATCGCCAGCAAGCTGGCTCCTACAGATACCCCACCGAGTTGAAGAACTCAGCAGGTACCTGTGGCAGCCGGCTTG CCGGCGATAGGGCCGCAACGGTTCTGCCACTGTCAGGTCCGATCACCTCCATGATCATCCCCGACATCATGATTCACCCCATCATCCGCGCCATGCCCTA CGCCGTGCGCCTCGCCTACATTGTGATTCGCTTCGTGATTTGCTTCGTGATTTGCCTCGTGGTTCGCTTCGTGATTTGCCTCATGGTTGGCTTCGTGGTT GGCGCCATCATCTGCCCCATTCCGGCCGCTCTCTCCACGACCTGAACTGGCATGGCCACCACCATCGCCACTATGACCGCTACCCGCACCGCCATGGCCT GCGCCGCTACCGTGTCCACCACCACCGCCGCTGCCGCCGTGACCACCACCTCCGCCACTGCCGCCACTGCCGCCACCGCCGTGACCACCGCCGCCACTTC
Amino Acid Sequence
>putative sigma-54 specific transcriptional regulator
MQLLTLPPSPQLATSIRATAQVFEDPRSLALLAHLQQVAPSEASVLIIGETGTGKELVARHIHNLSGRRNGPFVAVNCGAFSESLVEAELFGHEKGAFTG ALAAKAGWFEEANGGTLFLDEIGDLPLPIQVKLLRVLQEREVVRLGSRKSIAINVRVLAATNVQLEKAINAGHFREDLYYRLNVVALQLHPLRDRPGDIL PLARHFIRSYSERLGYGPVELSPKAQAKLVEYSWPGNIRELENVIHHSLLTCGDGLVQAQDLRLSHLRLERQEASNNGVEDLLLQAFSRLYEEQPGELYE KVENALLRSAYHFCHYNQVHTAQLLGLSRNVTRTRLIAIGELVVNKRRVQQEQAFDARVVRLSI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site