Pseudomonas aeruginosa NCAIM B.001380, K260_RS0116180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa NCAIM B.001380 K260DRAFT_scf7180000000053_quiver.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCACGCGCCGAACTGCTCCTCGGGCGCCTCTACTACGACGGCAAGTGGGCGCCGCAGGACCCGCGCAAGGCCGAGCGGCACCTGCTCAAGGCCGCCG CCAGCGAACCCCAGGCCAACTACTACCTGGGGCAGATCTACCGCCGCGGCTTCCTCGGCAAGGTCTATCCGCAGAAGGCCGTCGACCACCTGATCCTCGC CGCCCGCGCCGGCCAGGCCAGCGCCGACATGGCCCTGGCCCAGCTCTGGTCGCAGGGCCGCGGCATCCAGCCGAACCGGGTCAACGCCTACGTCTTCGGC CAGCTCGCCGTGCAGCAGCAGGTACCGCAGGCCAGCGACCTGCTCGGGCAGATCGAAGCGCAACTGCCGCCGGCCGAACGCAGCCAGGCGCAGCAATTGC TCAAGCGCGAACAACAGAGCCGCGGCAACAACTGGCAGGCCACCGTCAGCCTGCTGCAGAGCCAGGACTCGCCGATCAACGAAGAAGAGCCAGAAAGCCT
|
|
| DNA Sequence for Gene |
>K260_RS0116180
ATGAACAGCTCCCGTTCCGTCAACCCGCGGCCGTCCTTCGCGCCGCGCGCCCTGTCCCTGGCCATCGCCCTGCTGCTCGGCGCGCCGGCGTTCGCCGCCA ACAGCGGCGAGGCGCCGAAGAACTTCGGCCTGGACGTGAAGATCACCGGCGAATCGGAAAACGATCGCGACCTCGGCACCGCTCCCGGCGGCACCCTCAA CGACATCGGTATCGACCTGCGGCCCTGGGCCTTCGGCCAGTGGGGCGACTGGAGCGCCTACTTCATGGGCCAGGCGGTGGCCGCCACCGACACCATCGAG ACCGACACCCTGCAATCGGACACCGACGACGGCAACAACAGCCGCAACGACGGTCGCGAGCCGGACAAGAGCTACCTCGCCGCACGCGAATTCTGGGTCG ACTACGCCGGCCTCACCGCCTACCCCGGCGAGCACCTGCGCTTCGGCCGCCAGCGCCTGCGGGAAGACAGCGGCCAGTGGCAGGACACCAACATCGAGGC GCTGAACTGGAGCTTCGAGACCACCCTGCTCAACGCCCACGCCGGGGTCGCCCAGCGTTTCAGCGAATACCGCACCGACCTCGACGAACTGGCTCCGGAG GACAAGGACCGCACCCATGTGTTCGGCGACATTTCCACCCAGTGGGCGCCGCACCACCGCATCGGCGTGCGCATCCACCACGCCGACGACAGCGGCCACC TGCGCCGCCCCGGCGAGGAAGTCGACAACCTCGACAAGACCTATACCGGCCAGCTCACCTGGCTCGGCATCGAGGCTACCGGCGATGCCTACAACTATCG TTCGAGCATGCCGCTGAACTACTGGGCCAGCGCCACCTGGCTGACCGGCGACCGCGACAACCTGACCACCACCACGGTCGACGACCGGCGCATCGCCACC GGCAAGCAGAGCGGCGACGTCAATGCCTTCGGCGTCGACCTCGGCCTGCGCTGGAACATCGACGAGCAATGGAAGGCCGGCGTCGGCTACGCCCGCGGCA GCGGCGGTGGCAAGGACGGCGAGGAGCAGTTCCAGCAGACCGGGCTGGAGAGCAATCGCTCCAACTTCACCGGCACCCGCTCGCGCGTGCACCGCTTCGG CGAAGCCTTCCGCGGCGAACTGAGCAACCTCCAGGCAGCCACCCTGTTCGGCTCCTGGCAACTGCGCGAGGACTACGACGCGAGCCTGGTCTACCACAAG TTCTGGCGCGTCGACGACGACTCCGACATCGGTACCAGCGGCATCAACGCCGCCCTGCAACCGGGCGAGAAGGACATCGGCCAGGAACTCGACCTGGTGG TGACCAAGTACTTCAAGCAAGGCCTGCTGCCGGCCTCGATGAGCCAGTACGTCGACGAGCCCTCGGCGCTGATCCGCTTCCGCGGCGGCCTGTTCAAGCC GGGCGACGCCTACGGGCCGGGCACCGACTCGACCATGCACCGCGCCTTCGTCGACTTCATCTGGCGCTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCCGCGAGGAAACCGGACATGCCCGACATTTCCCTTTCGATCCCCCGCCGCCGGCTCCCGCGCCTGCGCCCGCTGGCCGCGGCAGTGCTCGGCGCGGT GCTGCTGCACGGCCAGGCGTGGGCGGCGCAGCCGGTGGAGAAACCGCAGCCGGTCCCGGCGCAGGCCGGCAACGAGCCGGGCCTGACCCAGGGCCTGAAG GAAACCGGCAACTACACGGTGACCACCGCGCCGGCCGAACCGTTGCACCTGGACCCGCCGAAACTGCCCGACCTCTCCGGCTACACCGCCGCCGCGGTGG AAGCCAAGATCGTGCGCAAGCCGGGTGGCCACGCCAGCGTGCAGCGCATGGTCCAGCAGCAGCCGCTGAAGGAGTTCACCGGTGGCAGCAACCGCCTCGC CGAATGGGTCAAGCGCCAGCGCCAGATGCCCCAGGCGATCTTCATCGAAGGCGGCTACGTGAACCTCGCCCAGCTCGCCGGCAAGCTTCCCGCCAGCGCG
|
|
| Amino Acid Sequence |
>alginate regulatory protein AlgE
MNSSRSVNPRPSFAPRALSLAIALLLGAPAFAANSGEAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIE TDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPE DKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIAT GKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHK FWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|