Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0112540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 Q378DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGCCGTGGCGCTGAACCTTGGCGACGAGGCGGCGCTCGGGCGTGCACTGGAGCAGATGCGCACACGCATTGCCGCCTACGCGCCAGAGGTTCCCTTC GATCAGGTCCTGCTTGAACCCATGGCCGGTGCGCCACTGGCCGAGCTGATCGTCGGCATCAAGCGCGAGCCGGACTTCGGCCTGGCGCTGGTGATCGGCG CGGGCGGCATCCTCGTCGAGCTGCTCAAGGACAGCAAAAGCCTGCTGCTGCCGACCACCGACGGTGCCATTCGCAATGCGCTGCTCGGCCTGCGCAGCGC GGCGCTGCTGCAGGGCTTCCGTGGCAAGCCGGCAGCGGACCTGGACGCGCTGGTCGCGGCCATCCGTGCCGTGGCCGACTACGCCTGCGAGAACGCCAGC CAGCTTTTGGAGCTGGATGTGAACCCATTGATGGTCGGTGCCACCGGCACCACCGCGGTCGATGCCTTGATCCGCCTCGGCCAGGTGTAAGGACATGAAC
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| DNA Sequence for Gene |
>Q378_RS0112540
ATGACGAACCAAACACTGACCGGTGGCCAGGCGCTGGTGCGCCTGCTGGCCAACTACGGGGTCGATACCGTCTTCGGTATTCCCGGTGTACATACCCTGG AGCTGTATCGCGGCCTGCCCGGCAGCGGCATCCGCCACGTCCTGACGCGCCACGAGCAGGGCGCCGGCTTCATGGCCGACGGCTATGCCCGGGTCAGCGG CAAGCCGGGGGTGTGCTTCATCATCACCGGCCCCGGCGTGACCAACGCGGCCACCGCCATCGGCCAGGCCTATGCCGACTCGATCCCGATGCTGGTGATC TCCAGCGTCAACCACACCGCGAGCCTGGGCAAAGGCTGGGGCTGCCTGCACGAGACCCAGGACCAGCGCGCCATGACGGCGCCGATCACCGCCTTCTCGA CCGTGGCCCTGAAGGCCGAAGACCTGCCCGAGCTGATCGCCCGCGCCTACGCCGTGTTCGACAGCGAGCGCCCGCGCCCGGTGCATATCTCGGTGCCGCT GGACGTGCTGGCGGCGCCGGTGGCGCGGGACTGGAGCAATGAAGTGGTGCGCCGCCCCGCTCGCGGCCCGGCCAATGCCGAGAGCCTGGAGCAGGCCGCC GGCAAGTTGGCGGCAGCCAAGCGCCCGATGATCATCGCCGGCGGTGGTGCGCTGCAGGCGGGTGCCGAGCTGCAGCTGTTGAGCAAACGCCTGGCCGCGC CGTTCTTCACCAGCGTCGCCGGCAAAGGGCTGGCGCCGCTGGACTCGCCACTCAATGCCGGCTCCACCCTGTGTGTGGAAGCGGGCTGGGAGCTGATCGC CGAGGCCGATGTGGTGCTGGCGGTCGGCACCGAGATGGCCGACACCGACTTCTGGCGCGAGCGCCTGCCACTGAACGGCGAGCTGCTGCGGGTGGATATC GACCCACGCAAGTTCAACGACTTCTACCCCTGCGCGGTGGCATTGCACGGCGATGCCCGGCAGACCGTGGCGGCGCTGCTCGAACAGCTGCCGGACAGCG TCCGTGATGCCACCCAGGCCAGTGCAGCGGTGGCCTGTCTGCGCAGCGCCGTGCAGGCGAGCCATGGCCCCTTGCAGTCGATCCACCAGTCCATCCTGGC CCGGATCGCCGCAGAGCTGCCGGACAACGCTTTCATCAGCACCGACATGACCCAGCTGGCCTACACCGGCAACTACGTCTTCAACAGCCGGGCGCCGCGC AGCTGGCTGCACCCGACCGGCTACGGCACCCTCGGCTACGGCCTGCCGGCGGGGATCGGCGGGATGTTCGGCAGTGCCGATCGCCCGGGGCTGGTGCTGG TCGGTGACGGTGGCTTCCTCTATACGGCGCAGGAGCTGGCCACTGCGGTCGAGGAACTGGACCGCCCGCTGGTGGTGCTGCTGTGGAACAACGACGCACT CGGCCAGATCCGCGACGACATGCTCAACCTGGACATCGAGCCCATCGGCGTACTGCCGCGCAACCCGGACTTCGCCGGCCTTGCCCGCGCGTTCGGCTGC ACGGTGGCCGAGCCGCAGAGCCTCGACGAACTGCAACGGGACATGCGCGGCGGCTTCGGCCGCAACGGCGTGACCCTGATCGAGCTCAAGCACGCCTGCG CGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCATCCCGCACAACAGGATACTTGCCATGCGTTTTTCCTCATTGACCCAACGTATCGCCGGTGACGGCGCCGCCGCGTGGGAGATCCACTACCGCGCC CTGGCCATGCTCGAACAGGGGCGCGACGTGCTGCTGCTGTCGGTCGGCGACCCGGATTTCGACACCCCCGCGCCGATCGTGCAGGCCGCCGTGGATAGCC TGCATGCGGGCAACACCCACTACGCCGATGTGCGTGGCAAGCGCAGCCTGCGCGAGGCCATCGCCCGCCGCCACCAGCAACGTAGCGGCCACGCGGTGAC GGCCGACCAGGTGACGGTGCTGGCCGGGGCGCAGTGCGCGCTGTTCTGCGTGGCGCAGTGCGTGCTGGAACCGGGCGATGAAGTGATCGTCGCCGAGCCG ATGTATGTCACCTACGAAGCGGTGTTCGGCGCCTGCGGTGCCAAGGTGGTGCCGGTGCCGGTGCGTTCGGAACATGGGTTTCGCGTGCAGCCCGAAGACG
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| Amino Acid Sequence |
>decarboxylase
MTNQTLTGGQALVRLLANYGVDTVFGIPGVHTLELYRGLPGSGIRHVLTRHEQGAGFMADGYARVSGKPGVCFIITGPGVTNAATAIGQAYADSIPMLVI SSVNHTASLGKGWGCLHETQDQRAMTAPITAFSTVALKAEDLPELIARAYAVFDSERPRPVHISVPLDVLAAPVARDWSNEVVRRPARGPANAESLEQAA GKLAAAKRPMIIAGGGALQAGAELQLLSKRLAAPFFTSVAGKGLAPLDSPLNAGSTLCVEAGWELIAEADVVLAVGTEMADTDFWRERLPLNGELLRVDI DPRKFNDFYPCAVALHGDARQTVAALLEQLPDSVRDATQASAAVACLRSAVQASHGPLQSIHQSILARIAAELPDNAFISTDMTQLAYTGNYVFNSRAPR SWLHPTGYGTLGYGLPAGIGGMFGSADRPGLVLVGDGGFLYTAQELATAVEELDRPLVVLLWNNDALGQIRDDMLNLDIEPIGVLPRNPDFAGLARAFGC TVAEPQSLDELQRDMRGGFGRNGVTLIELKHACAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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