Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00068827, Q378_RS0111920

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 27 187 2.7E-68
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 22 336 2.6E-114
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 234 336 1.03E-6
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 28 263 3.04E-69
Gene3D G3DSA:1.10.8.60 - - - 192 257 6.5E-21
Gene3D G3DSA:1.10.10.60 - - - 258 340 2.8E-7
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 41 184 2.6E-11
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 15 191 1.1E-73
CDD cd00009 AAA - - 40 185 3.39806E-25
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 11 191 4.6E-65

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.